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Description: Use Debian packaged SeqAn library instead of copy in upstream source
Author: Andreas Tille <tille@debian.org>
Date: 2011-01-30
Last-Update: 2013-04-18
Reviewed-by: Ognyan Kulev <ogi@debian.org>
--- a/Makefile
+++ b/Makefile
@@ -5,9 +5,7 @@
prefix = /usr/local
bindir = $(prefix)/bin
-SEQAN_DIR = SeqAn-1.1
-SEQAN_INC = -I $(SEQAN_DIR)
-INC = $(SEQAN_INC) -I third_party
+INC = `pkg-config --cflags seqan-1.4`
CPP = g++
CXX = $(CPP)
CC = gcc
@@ -168,7 +166,6 @@
$(wildcard genomes/NC_008253.fna) \
$(wildcard reads/e_coli_1000.*) \
$(wildcard reads/e_coli_1000_*) \
- SeqAn-1.1 \
bowtie \
bowtie-build \
bowtie-inspect \
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