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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=4
inherit eutils
DESCRIPTION="Sequence analysis using profile hidden Markov models"
HOMEPAGE="http://hmmer.janelia.org/"
SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${PV}/${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
IUSE="+cpu_flags_x86_sse mpi +threads gsl static-libs"
KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos"
DEPEND="
mpi? ( virtual/mpi )
gsl? ( >=sci-libs/gsl-1.12 )"
RDEPEND="${DEPEND}"
src_prepare() {
epatch \
"${FILESDIR}"/${P}-fix_tests.patch \
"${FILESDIR}"/${P}-perl-5.16-2.patch
}
src_configure() {
econf \
$(use_enable cpu_flags_x86_sse sse) \
$(use_enable mpi) \
$(use_enable threads) \
$(use_with gsl)
}
src_install() {
default
use static-libs && dolib.a src/libhmmer.a easel/libeasel.a
insinto /usr/share/${PN}
doins -r tutorial
dodoc Userguide.pdf
}
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