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# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=4
inherit autotools eutils
DESCRIPTION="Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences"
HOMEPAGE="http://maq.sourceforge.net/"
SRC_URI="
mirror://sourceforge/${PN}/${P}.tar.bz2
mirror://sourceforge/${PN}/calib-36.dat.gz"
LICENSE="GPL-3"
SLOT="0"
IUSE=""
KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
RDEPEND="sys-libs/zlib"
DEPEND="${RDEPEND}"
src_prepare() {
epatch \
"${FILESDIR}"/${P}-flags.patch \
"${FILESDIR}"/${P}-bfr-overfl.patch \
"${FILESDIR}"/${P}-gcc-4.7.patch
sed \
-e '/ext_CFLAGS/s:-m64::g' \
-i configure* || die
eautoreconf
}
src_install() {
default
insinto /usr/share/maq
doins "${WORKDIR}"/*.dat
doman maq.1
dodoc ${PN}.pdf
}
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