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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
inherit autotools
DESCRIPTION="Mapping and Assembly with Qualities, mapping NGS reads to reference genomes"
HOMEPAGE="http://maq.sourceforge.net/"
SRC_URI="
mirror://sourceforge/${PN}/${P}.tar.bz2
mirror://sourceforge/${PN}/calib-36.dat.gz"
LICENSE="GPL-3"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
RDEPEND="sys-libs/zlib"
DEPEND="${RDEPEND}"
PATCHES=(
"${FILESDIR}"/${P}-flags.patch
"${FILESDIR}"/${P}-bfr-overfl.patch
"${FILESDIR}"/${P}-gcc-4.7.patch
"${FILESDIR}"/${P}-remove-64bit-flag.patch
)
src_prepare() {
default
eautoreconf
}
src_install() {
default
insinto /usr/share/${PN}
doins "${WORKDIR}"/*.dat
doman maq.1
dodoc ${PN}.pdf
}
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