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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI="2"
ESVN_REPO_URI="https://mauve.svn.sourceforge.net/svnroot/mauve/mauve/trunk"
WANT_ANT_TASKS="ant-nodeps"
EANT_GENTOO_CLASSPATH="biojava,zeus-jscl,dbus-java"
JAVA_ANT_REWRITE_CLASSPATH="true"
JAVA_PKG_BSFIX_NAME="build.xml"
inherit subversion java-pkg-2 java-ant-2 eutils
DESCRIPTION="Multiple genome alignment with large-scale evolutionary events (GUI component)"
HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/"
SRC_URI=""
LICENSE="GPL-2"
SLOT="0"
IUSE="doc"
KEYWORDS=""
CDEPEND="~sci-biology/biojava-1.6
>=dev-java/dbus-java-2.5.1
~dev-java/zeus-jscl-1.08
dev-java/ant-nodeps"
RDEPEND=">=virtual/jre-1.5
sci-biology/mauvealigner
${CDEPEND}"
DEPEND=">=virtual/jdk-1.5
media-gfx/icoutils
${CDEPEND}"
S="${WORKDIR}"
java_prepare() {
find -name '*.jar' -not -name 'jarbundler*' -print -delete
perl -i -ne 'print unless /<dmg/ or /<taskdef.+name="dmg"/../<\/taskdef>/' build.xml
perl -i -ne 'print unless /<ssh/../<\/ssh/ or /<taskdef.+name="ssh"/../<\/taskdef>/' build.xml
perl -i -ne 'print unless /<retroweaver/ or /<taskdef.+name="retroweaver"/../<\/taskdef>/' build.xml
}
src_install() {
java-pkg_dojar Mauve.jar
java-pkg_dolauncher Mauve --main org.gel.mauve.gui.Mauve
icotool -x win32/mauve.ico
insinto /usr/share/pixmaps
newins mauve_4_48x48x32.png Mauve.png
make_desktop_entry Mauve Mauve Mauve
}
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