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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=4
PYTHON_DEPEND="2"
inherit autotools eutils python
DESCRIPTION="The MEME/MAST system - Motif discovery and search"
HOMEPAGE="http://meme.sdsc.edu/meme"
SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz"
LICENSE="meme"
SLOT="0"
KEYWORDS="amd64 x86"
IUSE="debug examples mpi"
DEPEND="
app-shells/tcsh
dev-libs/libxml2:2
dev-libs/libxslt
mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"
S="${WORKDIR}/${PN}_${PV}"
#pkg_setup() {
# generate meme group to restrict logging to /var/log/meme
# enewgroup meme
# python_pkg_setup
# python_set_active_version 2
#}
src_prepare() {
use examples || sed -e '/SUBDIRS/s:examples::g' -i doc/Makefile.am
sed \
-e '/flags/s:-O3::g' \
-e '/opt/s:-O::g' \
-e '/debug/s:-ggdb::' \
-e '/debug/s:-g::' \
-e 's:CFLAGS=:CFLAGS+=:g' \
-i configure.ac || die
epatch \
"${FILESDIR}"/${P}-Makefile.am.patch
eautoreconf
}
src_configure() {
MY_PREFIX="${ROOT}opt/meme"
USE_DISABLE_MPI=""; if ! use mpi; then USE_DISABLE_MPI="--enable-serial"; fi
econf \
--sysconfdir="${EPREFIX}/etc/meme" \
--with-logs="${ROOT}var/log/meme" \
$(use_enable debug) \
$USE_DISABLE_MPI
}
src_test() {
# bug #297070
emake -j1 test
}
src_install() {
local i
default
for i in "${ED}"/usr/bin/*; do
mv "${ED}"/usr/bin/{,meme-}$(basename ${i}) || die
done
echo "PATH=/opt/${PN}/bin" > 99${PN}
doenvd 99${PN}
# allow logging only for members of meme group
# diropts -m 0770 -g meme -o root
diropts -m ugo+rwxt -o root
keepdir /var/log/meme
}
#pkg_postinst() {
# einfo 'Log files are produced in the "/var/log/meme" directory. Users'
# einfo 'need to be part of the meme group to use this facility.'
#}
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