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|
makefile | 14 ++++++--------
1 files changed, 6 insertions(+), 8 deletions(-)
diff --git a/makefile b/makefile
index db7c904..109488f 100644
--- a/makefile
+++ b/makefile
@@ -10,18 +10,18 @@
#
USEMPI ?= no
-64BIT_VERSION ?= yes
+64BIT_VERSION ?= no
USEREADLINE ?= yes
CYGWIN_BUILD ?= no
USECOMPRESSION ?= no
MOTHUR_FILES="\"Enter_your_default_path_here\""
RELEASE_DATE = "\"8/8/2012\""
VERSION = "\"1.27.0\""
-FORTAN_COMPILER = gfortran
-FORTRAN_FLAGS =
+FORTAN_COMPILER = ${FC}
+FORTRAN_FLAGS = ${FCFLAGS}
# Optimize to level 3:
-CXXFLAGS += -O3
+#CXXFLAGS += -O3
ifeq ($(strip $(64BIT_VERSION)),yes)
#if you are using centos uncomment the following lines
@@ -69,7 +69,7 @@ endif
ifeq ($(strip $(USEMPI)),yes)
- CXX = mpic++
+# CXX = mpic++
CXXFLAGS += -DUSE_MPI
endif
@@ -95,11 +95,9 @@ OBJECTS=$(patsubst %.cpp,%.o,$(wildcard *.cpp))
OBJECTS+=$(patsubst %.c,%.o,$(wildcard *.c))
OBJECTS+=$(patsubst %.f,%.o,$(wildcard *.f))
-mothur : fortranSource $(OBJECTS) uchime
+mothur : fortranSource $(OBJECTS)
$(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS) $(LIBS)
- strip mothur
-
uchime:
cd uchime_src && ./mk && mv uchime .. && cd ..
|
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