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diff --git a/Makefile b/Makefile
index 75fc47a..4a19140 100644
--- a/Makefile
+++ b/Makefile
@@ -15,6 +15,8 @@ CXX = g++
# c) RELEASE mode
################################################################################
+OPT_CXXFLAGS = -O3 -W -Wall -pedantic -funroll-loops
+
OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.12"
# debug mode
@@ -25,7 +27,7 @@ OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.12"
# release mode
#CXXFLAGS = -O3 -W -Wall -pedantic -DNDEBUG $(OTHERFLAGS) -mmmx -msse -msse2 -mfpmath=sse -march=pentium4 -mcpu=pentium4 -funroll-loops -fomit-frame-pointer
-CXXFLAGS = -O3 -W -Wall -pedantic -DNDEBUG $(OTHERFLAGS) -funroll-loops
+CXXFLAGS = $(OPT_CXXFLAGS) -DNDEBUG $(OTHERFLAGS)
################################################################################
# 3) Dependencies
@@ -37,19 +39,19 @@ TARGETS = probcons compare project makegnuplot
all : $(TARGETS)
probcons : MultiSequence.h ProbabilisticModel.h ScoreType.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h Defaults.h SafeVector.h Main.cc
- $(CXX) $(CXXFLAGS) -lm -o probcons Main.cc
+ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o probcons Main.cc -lm
compare : MultiSequence.h Sequence.h FileBuffer.h SafeVector.h CompareToRef.cc
- $(CXX) $(CXXFLAGS) -o compare CompareToRef.cc
+ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o compare CompareToRef.cc
fixref : MultiSequence.h ProbabilisticModel.h ScoreType.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h Defaults.h SafeVector.h FixRef.cc
- $(CXX) $(CXXFLAGS) -o fixref FixRef.cc
+ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o fixref FixRef.cc
project : MultiSequence.h Sequence.h SafeVector.h ProjectPairwise.cc
- $(CXX) $(CXXFLAGS) -o project ProjectPairwise.cc
+ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o project ProjectPairwise.cc
makegnuplot : MakeGnuPlot.cc
- $(CXX) $(CXXFLAGS) -o makegnuplot MakeGnuPlot.cc
+ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o makegnuplot MakeGnuPlot.cc
.PHONY : clean
clean:
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