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authorDavid Seifert <soap@gentoo.org>2021-05-08 16:14:54 +0200
committerDavid Seifert <soap@gentoo.org>2021-05-08 16:14:54 +0200
commit5c94901047b60e7e21d38dea38be43e2d5f7a816 (patch)
tree407228d3624ace3ca35173d084b9f0baa884880c /sci-biology/kallisto/files/kallisto-0.46.2-gcc11.patch
parentdev-perl/String-Format: Version bump 1.18 (diff)
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sci-biology/kallisto: Bump to 0.46.2
Bug: https://bugs.gentoo.org/696504 Bug: https://bugs.gentoo.org/708658 Bug: https://bugs.gentoo.org/788427 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology/kallisto/files/kallisto-0.46.2-gcc11.patch')
-rw-r--r--sci-biology/kallisto/files/kallisto-0.46.2-gcc11.patch21
1 files changed, 21 insertions, 0 deletions
diff --git a/sci-biology/kallisto/files/kallisto-0.46.2-gcc11.patch b/sci-biology/kallisto/files/kallisto-0.46.2-gcc11.patch
new file mode 100644
index 000000000000..19594f067776
--- /dev/null
+++ b/sci-biology/kallisto/files/kallisto-0.46.2-gcc11.patch
@@ -0,0 +1,21 @@
+From 1d63e9d731bada64f6038818e27f06da63007d73 Mon Sep 17 00:00:00 2001
+From: Nilesh Patra <npatra974@gmail.com>
+Date: Thu, 4 Mar 2021 23:38:30 +0530
+Subject: [PATCH] Fix GCC-11 Build Failure: include limits lib
+
+---
+ src/MinCollector.h | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/src/MinCollector.h b/src/MinCollector.h
+index a905f1f..c4460fb 100644
+--- a/src/MinCollector.h
++++ b/src/MinCollector.h
+@@ -7,6 +7,7 @@
+ #include <sstream>
+ #include <vector>
+ #include <unordered_map>
++#include <limits>
+
+ #include "KmerIndex.h"
+ #include "weights.h"