diff options
Diffstat (limited to 'sci-biology/cufflinks/files/cufflinks-2.2.1-flags.patch')
| -rw-r--r-- | sci-biology/cufflinks/files/cufflinks-2.2.1-flags.patch | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/sci-biology/cufflinks/files/cufflinks-2.2.1-flags.patch b/sci-biology/cufflinks/files/cufflinks-2.2.1-flags.patch new file mode 100644 index 000000000000..47784088fab9 --- /dev/null +++ b/sci-biology/cufflinks/files/cufflinks-2.2.1-flags.patch @@ -0,0 +1,28 @@ + configure.ac | 7 ++++--- + 1 file changed, 4 insertions(+), 3 deletions(-) + +diff --git a/configure.ac b/configure.ac +index 96ffbac..e88b8e4 100755 +--- a/configure.ac ++++ b/configure.ac +@@ -61,7 +61,8 @@ AC_CANONICAL_HOST + + # set CFLAGS and CXXFLAGS + user_CFLAGS=${CFLAGS} +-generic_CFLAGS="-Wall -Wno-strict-aliasing -g -gdwarf-2 -Wunused -Wuninitialized -ftemplate-depth-1024" ++generic_CFLAGS="-Wall -Wno-strict-aliasing -Wunused -Wuninitialized" ++generic_CXXFLAGS="-Wall -Wno-strict-aliasing -Wunused -Wuninitialized -ftemplate-depth-1024" + ext_CFLAGS="" + debug_CFLAGS="" + #echo "${host_cpu}-${host_os}" +@@ -106,8 +107,8 @@ AC_ARG_ENABLE(profiling, [ --enable-profiling enable profiling with + [ext_LDFLAGS="-lprofiler -ltcmalloc"], []) + + CFLAGS="${generic_CFLAGS} ${ext_CFLAGS} ${user_CFLAGS} ${debug_CFLAGS} ${OPENMP_CFLAGS}" +-CXXFLAGS="$CFLAGS" +-CXXFLAGS="${CXXFLAGS} ${BOOST_CPPFLAGS} ${BAM_CPPFLAGS} ${EIGEN_CPPFLAGS}" ++CXXFLAGS="${generic_CFLAGS} ${CXXFLAGS}" ++CPPFLAGS="${CPPFLAGS} ${BOOST_CPPFLAGS} ${BAM_CPPFLAGS} ${EIGEN_CPPFLAGS}" + user_LDFLAGS="$LDFLAGS" + LDFLAGS="${ext_LDFLAGS} ${user_LDFLAGS}" + |