diff options
Diffstat (limited to 'sci-biology/kallisto/files/kallisto-0.46.2-htslib.patch')
| -rw-r--r-- | sci-biology/kallisto/files/kallisto-0.46.2-htslib.patch | 52 |
1 files changed, 52 insertions, 0 deletions
diff --git a/sci-biology/kallisto/files/kallisto-0.46.2-htslib.patch b/sci-biology/kallisto/files/kallisto-0.46.2-htslib.patch new file mode 100644 index 000000000000..0e926136261c --- /dev/null +++ b/sci-biology/kallisto/files/kallisto-0.46.2-htslib.patch @@ -0,0 +1,52 @@ +--- a/src/KmerIndex.cpp ++++ b/src/KmerIndex.cpp +@@ -4,7 +4,7 @@ + #include <ctype.h> + #include <zlib.h> + #include <unordered_set> +-#include "kseq.h" ++#include <htslib/kseq.h> + + #ifndef KSEQ_INIT_READY + #define KSEQ_INIT_READY +--- a/src/ProcessReads.cpp ++++ b/src/ProcessReads.cpp +@@ -1,6 +1,6 @@ + /* + #include <zlib.h> +-#include "kseq.h" ++#include <htslib/kseq.h> + #include <string> + #include <vector> + #include <unordered_map> +@@ -20,7 +20,7 @@ + #include <iomanip> + + #include "ProcessReads.h" +-#include "kseq.h" ++#include <htslib/kseq.h> + #include "PseudoBam.h" + #include "Fusion.hpp" + #include "BUSData.h" +--- a/src/ProcessReads.h ++++ b/src/ProcessReads.h +@@ -2,7 +2,7 @@ + #define KALLISTO_PROCESSREADS_H + + #include <zlib.h> +-#include "kseq.h" ++#include <htslib/kseq.h> + #include <string> + #include <vector> + #include <unordered_map> +--- a/unit_tests/test_kmerhashtable.cpp ++++ b/unit_tests/test_kmerhashtable.cpp +@@ -13,7 +13,7 @@ + #include "KmerHashTable.h" + + #include <zlib.h> +-#include "kseq.h" ++#include <htslib/kseq.h> + + #ifndef KSEQ_INIT_READY + #define KSEQ_INIT_READY |