diff options
Diffstat (limited to 'sci-biology/meme/meme-4.8.1-r2.ebuild')
-rw-r--r-- | sci-biology/meme/meme-4.8.1-r2.ebuild | 85 |
1 files changed, 0 insertions, 85 deletions
diff --git a/sci-biology/meme/meme-4.8.1-r2.ebuild b/sci-biology/meme/meme-4.8.1-r2.ebuild deleted file mode 100644 index 8a1482c0b32d..000000000000 --- a/sci-biology/meme/meme-4.8.1-r2.ebuild +++ /dev/null @@ -1,85 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=4 - -PYTHON_DEPEND="2" - -inherit autotools eutils python - -DESCRIPTION="The MEME/MAST system - Motif discovery and search" -HOMEPAGE="http://meme.sdsc.edu/meme" -SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz" - -LICENSE="meme" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="debug examples mpi" - -DEPEND=" - app-shells/tcsh - dev-libs/libxml2:2 - dev-libs/libxslt - mpi? ( virtual/mpi )" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/${PN}_${PV}" - -#pkg_setup() { - # generate meme group to restrict logging to /var/log/meme -# enewgroup meme -# python_pkg_setup -# python_set_active_version 2 -#} - -src_prepare() { - use examples || sed -e '/SUBDIRS/s:examples::g' -i doc/Makefile.am - sed \ - -e '/flags/s:-O3::g' \ - -e '/opt/s:-O::g' \ - -e '/debug/s:-ggdb::' \ - -e '/debug/s:-g::' \ - -e 's:CFLAGS=:CFLAGS+=:g' \ - -i configure.ac || die - epatch \ - "${FILESDIR}"/${P}-Makefile.am.patch - eautoreconf -} - -src_configure() { - MY_PREFIX="${ROOT}opt/meme" - USE_DISABLE_MPI=""; if ! use mpi; then USE_DISABLE_MPI="--enable-serial"; fi - econf \ - --sysconfdir="${EPREFIX}/etc/meme" \ - --with-logs="${ROOT}var/log/meme" \ - $(use_enable debug) \ - $USE_DISABLE_MPI -} - -src_test() { - # bug #297070 - emake -j1 test -} - -src_install() { - local i - default - - for i in "${ED}"/usr/bin/*; do - mv "${ED}"/usr/bin/{,meme-}$(basename ${i}) || die - done - - echo "PATH=/opt/${PN}/bin" > 99${PN} - doenvd 99${PN} - - # allow logging only for members of meme group - # diropts -m 0770 -g meme -o root - diropts -m ugo+rwxt -o root - keepdir /var/log/meme -} - -#pkg_postinst() { -# einfo 'Log files are produced in the "/var/log/meme" directory. Users' -# einfo 'need to be part of the meme group to use this facility.' -#} |