diff options
Diffstat (limited to 'sci-biology/samtools/samtools-1.10-r1.ebuild')
-rw-r--r-- | sci-biology/samtools/samtools-1.10-r1.ebuild | 56 |
1 files changed, 56 insertions, 0 deletions
diff --git a/sci-biology/samtools/samtools-1.10-r1.ebuild b/sci-biology/samtools/samtools-1.10-r1.ebuild new file mode 100644 index 000000000000..940895616906 --- /dev/null +++ b/sci-biology/samtools/samtools-1.10-r1.ebuild @@ -0,0 +1,56 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit autotools toolchain-funcs + +DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" +HOMEPAGE="http://www.htslib.org/" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" + +RDEPEND=" + dev-lang/perl + =sci-libs/htslib-${PV}* + sys-libs/ncurses:=[unicode(+)] + sys-libs/zlib:=" +DEPEND="${RDEPEND}" +BDEPEND="virtual/pkgconfig" + +src_prepare() { + default + + # remove bundled htslib + rm -r htslib-* || die + + eautoreconf +} + +src_configure() { + econf \ + --with-ncurses \ + --with-htslib=system \ + CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw)" +} + +src_compile() { + emake AR="$(tc-getAR)" +} + +src_test() { + # the tview test diffs expect 80-columns output + unset COLUMNS + + default +} + +src_install() { + default + + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples +} |