diff options
Diffstat (limited to 'sci-biology/velvet')
| -rw-r--r-- | sci-biology/velvet/velvet-1.2.10.ebuild | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/sci-biology/velvet/velvet-1.2.10.ebuild b/sci-biology/velvet/velvet-1.2.10.ebuild index 53f5dd644f91..31560aee1886 100644 --- a/sci-biology/velvet/velvet-1.2.10.ebuild +++ b/sci-biology/velvet/velvet-1.2.10.ebuild @@ -26,7 +26,7 @@ src_prepare() { if ! use doc; then sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die fi - elog "Upstream recommendes using -O3 in CFLAGS" + elog "Upstream recommends using -O3 in CFLAGS" echo elog "To adjust the MAXKMERLENGTH, CATEGORIES, BIGASSEMBLY, LONGSEQUENCES parameters" elog "as described in the PDF manual, please set the variables by prepending VELVET_ in" @@ -53,11 +53,11 @@ src_prepare() { CFLAGS="${CFLAGS}" OPT="${CFLAGS}" ) - if use openmp; then MAKE_XOPTS+=( OPENMP=1 ); fi - if [[ ${VELVET_MAXKMERLENGTH} != "" ]]; then MAKE_XOPTS+=( MAXKMERLENGTH=${VELVET_MAXKMERLENGTH} ); fi - if [[ ${VELVET_CATEGORIES} != "" ]]; then MAKE_XOPTS+=( CATEGORIES=${VELVET_CATEGORIES} ); fi - if [[ ${VELVET_BIGASSEMBLY} != "" ]]; then MAKE_XOPTS+=( BIGASSEMBLY=${VELVET_BIGASSEMBLY} ); fi - if [[ ${VELVET_LONGSEQUENCES} != "" ]]; then MAKE_XOPTS+=( LONGSEQUENCES=${VELVET_LONGSEQUENCES} ); fi + use openmp && MAKE_XOPTS+=( OPENMP=1 ) + test "${VELVET_MAXKMERLENGTH}" != "" && MAKE_XOPTS+=( MAXKMERLENGTH=${VELVET_MAXKMERLENGTH} ) + test "${VELVET_CATEGORIES}" != "" && MAKE_XOPTS+=( CATEGORIES=${VELVET_CATEGORIES} ) + test "${VELVET_BIGASSEMBLY}" != "" && MAKE_XOPTS+=( BIGASSEMBLY=${VELVET_BIGASSEMBLY} ) + test "${VELVET_LONGSEQUENCES}" != "" && MAKE_XOPTS+=( LONGSEQUENCES=${VELVET_LONGSEQUENCES} ) } src_compile() { |