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* sci-libs/libgeotiff: Fix tests with >=sci-libs/proj-6.2Andreas Sturmlechner2020-04-062-0/+59
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/geos: Drop 3.7.2Andreas Sturmlechner2020-04-053-76/+0
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/geos: arm64 stable (bug #707516)Mart Raudsepp2020-04-051-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-libs/vtk: Fix wrong installation path for libQVTKWidgetPlugin.soRafael Palomar2020-04-051-1/+1
| | | | | | | | | | This fixes the wrong installation path of libQVTKWidgetPlugin.so. From /usr/usr/... --> /usr/... Closes: https://bugs.gentoo.org/646422 Signed-off-by: Rafael Palomar Ávalos <rafael.palomar@rr-research.no> Closes: https://github.com/gentoo/gentoo/pull/15218 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: Fix installation path for CMake filesRafael Palomar2020-04-051-0/+1
| | | | | | | | | | | | | On amd64, installation will drop files in /usr/lib64 except for CMake files which will be installed on /usr/lib. This fixes the installation path for the CMake files (/usr/lib64). Revision bump vtk-8.1.0-r4 --> vtk-8.1.0-r5 Signed-off-by: Rafael Palomar Ávalos <rafael.palomar@rr-research.no> Closes: https://github.com/gentoo/gentoo/pull/15213 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/suitesparse: new version 5.4.0.Michael Orlitzky2020-04-042-4/+42
| | | | | | | | | | | | | | | | | All of the individual suitesparse components have been updated, but I didn't realize there was a metapackage. And the 4.x versions of the metapackage have incorrect dependencies that are trying to pull in the components that belong to suitesparse-5.4.0. This is producing some confusing errors. This commit adds a new version of the metapackage with correct dependencies (tied to the versions of the components that ship with suitesparse-5.4.0), and should let ~arch users upgrade everything after switching from USE=metis to USE=partition. At some later point, we can prune the 4.x metapackage and components and be dont with that. Bug: https://bugs.gentoo.org/711610 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* */*: Drop stable ia64 keywordsMatt Turner2020-04-0322-22/+22
| | | | Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/fflas-ffpack: new package for finite-field linear algebra.Michael Orlitzky2020-04-034-0/+190
| | | | | | | | | | | | | | | | | | | | | | | This is a straightforward import of the latest fflas-ffpack-2.4.3.ebuild that François Bissey has been maintaining in the sage-on-gentoo overlay, with only a few minor changes: * I added a "+" to the LICENSE to match the upstream LGPL-2.1+. * I switched the openmp check to use tc-check-openmp() conditionally on the MERGE_TYPE variable. * Added BDEPEND="virtual/pkgconfig" since we patch in a call to PKG_CHECK_MODULES. I also removed a warning about build failures with USE=openmp. From what I can tell, this stems from an older report (upstream Github issue 48) using gcc-4.9.x that was never fully debugged. If the problems persist, we can revisit that report, or just mask the flag. Closes: https://bugs.gentoo.org/show_bug.cgi?id=715678 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/scikits_learn-0.22.2_p1: Version bumpPatrick McLean2020-04-022-0/+81
| | | | | | Copyright: Sony Interactive Entertainment Inc. Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Patrick McLean <chutzpah@gentoo.org>
* sci-libs/openlibm: version bump to 0.7.0Jeffrey Lin2020-04-022-0/+24
| | | | | Signed-off-by: Jeffrey Lin <jeffrey@icurse.nl> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/scikits-0.1-r2: add python3_8Patrick McLean2020-04-021-1/+1
| | | | | | Copyright: Sony Interactive Entertainment Inc. Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Patrick McLean <chutzpah@gentoo.org>
* sci-libs/opencascade: drop oldBernd Waibel2020-04-016-227/+0
| | | | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/15140 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/opencascade: fix unused cmake variableBernd Waibel2020-04-011-2/+7
| | | | | | | Closes: https://bugs.gentoo.org/710694 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/geos: arm stable wrt bug #707516Agostino Sarubbo2020-03-311-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="arm" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/proj: arm64 stable (bug #706146)Mart Raudsepp2020-03-291-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-libs/cartopy: New packageThomas Beierlein2020-03-293-0/+81
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/fftw: fix build with mpichChristoph Junghans2020-03-292-20/+196
| | | | | | Closes: https://bugs.gentoo.org/699650 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/tensorflow: bump 2.2.0_rc2Jason Zaman2020-03-292-0/+381
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/libgeodecomp: Fix compile issues against hpx v1.4Kurt Kanzenbach2020-03-283-1/+282
| | | | | | | | | | Adding patches to fix compile issues and warnings against >=sys-cluster/hpx-1.4. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Kurt Kanzenbach <kurt@kmk-computers.de> Closes: https://github.com/gentoo/gentoo/pull/15137 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/libgeodecomp: Drop oldKurt Kanzenbach2020-03-286-388/+0
| | | | | | | | | | | | Reason: It's quite old and would require to maintain lots of other old libraries versions of cuda, hpx, libflatarray... I'd recommend to use the pre 0.5.0 version to get all the newest features anyway. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Kurt Kanzenbach <kurt@kmk-computers.de> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/geos: --disable-inline with armAndreas Sturmlechner2020-03-282-3/+9
| | | | | | Bug: https://bugs.gentoo.org/709368 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* */*: Discontinue Gentoo SuperH portMikle Kolyada2020-03-266-9/+9
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --ignore-arches Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/gdal: Restrict to <app-text/poppler-0.85.0Andreas Sturmlechner2020-03-261-1/+1
| | | | | | Closes: https://bugs.gentoo.org/714826 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/geos: 3.8.1 version bumpAndreas Sturmlechner2020-03-262-0/+51
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/openblas: version bump.Benda Xu2020-03-262-0/+128
| | | | | | Closes: https://bugs.gentoo.org/714598 Package-Manager: Portage-2.3.88, Repoman-2.3.18 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/m4ri: x86 stable wrt bug #714174Agostino Sarubbo2020-03-251-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/fplll: x86 stable wrt bug #714170Agostino Sarubbo2020-03-251-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/m4ri: ppc64 stable wrt bug #714174Agostino Sarubbo2020-03-251-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/m4ri: amd64 stable wrt bug #714174Agostino Sarubbo2020-03-251-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/fplll: amd64 stable wrt bug #714170Agostino Sarubbo2020-03-251-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/fftw: update live ebuild, migrate to CPU_FLAGS_PPCGeorgy Yakovlev2020-03-241-3/+3
| | | | | | | Package-Manager: Portage-2.3.94, Repoman-2.3.21 Signed-off-by: Georgy Yakovlev <gyakovlev@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/14975 Signed-off-by: Georgy Yakovlev <gyakovlev@gentoo.org>
* sci-libs/libbraiding: maintainer stabilize on amd64.Michael Orlitzky2020-03-241-1/+1
| | | | | | | | | This package doesn't have a test suite, so to spare the arch team a pointless build test, I've stabilized it myself on amd64. The library has been indirectly tested through SageMath. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/gsl: x86 stable wrt bug #700196Agostino Sarubbo2020-03-221-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/gsl: ppc64 stable wrt bug #700196Agostino Sarubbo2020-03-221-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/ceres-solver: Drop USE c++11Andreas Sturmlechner2020-03-221-3/+4
| | | | | | Closes: https://bugs.gentoo.org/705192 Package-Manager: Portage-2.3.94, Repoman-2.3.21 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/shapelib: Drop 1.4.0-r1 and 1.4.1Andreas Sturmlechner2020-03-213-78/+0
| | | | | Package-Manager: Portage-2.3.94, Repoman-2.3.21 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/shapelib: arm64 stable (bug #707520)Mart Raudsepp2020-03-211-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-libs/htslib: x86 stable wrt bug #713236Agostino Sarubbo2020-03-201-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/htslib: amd64 stable wrt bug #713236Agostino Sarubbo2020-03-201-2/+2
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/brial: new library for polynomials over boolean rings.Michael Orlitzky2020-03-193-0/+71
| | | | | | | | | | | | This library is maintained upstream and in the sage-on-gentoo overlay by François Bissey, but it is well-packaged and passes its tests. It is a dependency of SageMath, and the system copy will eventually be usable by Sage, so now is a good time to adopt it. The overlay ebuild was used with minimal changes. Closes: https://bugs.gentoo.org/713330 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/indilib: 1.8.4 version bumpAndreas Sturmlechner2020-03-192-0/+57
| | | | | Package-Manager: Portage-2.3.94, Repoman-2.3.21 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/ceres-solver: 1.14.0 version bump, EAPI-7 bump, cmake.eclassAndreas Sturmlechner2020-03-192-0/+101
| | | | | | | | | fix doc install path python3_7 + python3_8 Closes: https://bugs.gentoo.org/700294 Package-Manager: Portage-2.3.94, Repoman-2.3.21 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/ceres-solver: Drop 1.11.0Andreas Sturmlechner2020-03-192-98/+0
| | | | | Package-Manager: Portage-2.3.94, Repoman-2.3.21 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/matio: Version bump to 1.5.17David Seifert2020-03-162-0/+47
| | | | | | | | | | Bug: https://bugs.gentoo.org/603218 Bug: https://bugs.gentoo.org/678816 Bug: https://bugs.gentoo.org/679476 Bug: https://bugs.gentoo.org/695314 Bug: https://bugs.gentoo.org/711822 Package-Manager: Portage-2.3.94, Repoman-2.3.21 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libgeodecomp: Fix boost detectionKurt Kanzenbach2020-03-152-0/+93
| | | | | | | | | | | | | | When hpx is installed libgeodecomp tries to use the boost libraries detected by hpx. That doesn't work, because the wrong variables are referenced and hpx uses fewer boost libraries than libgeodecomp. So remove that and use the system boost libraries in all cases. Closes: https://bugs.gentoo.org/686294 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Kurt Kanzenbach <kurt@kmk-computers.de> Closes: https://github.com/gentoo/gentoo/pull/14855 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/libgeodecomp: Add current versionKurt Kanzenbach2020-03-154-0/+409
| | | | | | | | | Version v0.4.0 is quite old. Thus it makes sense to add the possibility to build from the current source code. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Kurt Kanzenbach <kurt@kmk-computers.de> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/libgeodecomp: Add homepage to official repositoryKurt Kanzenbach2020-03-151-1/+3
| | | | | | | | Add homepage to official source code repository. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Kurt Kanzenbach <kurt@kmk-computers.de> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/libgeodecomp: Sort options and dependenciesKurt Kanzenbach2020-03-151-6/+6
| | | | | | | | Sort options and dependencies alphanumerically. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Kurt Kanzenbach <kurt@kmk-computers.de> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/libgeodecomp: Remove unnecessary boost versionKurt Kanzenbach2020-03-151-1/+1
| | | | | | | | The check for boost>=1.48 is nowadays always true. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Kurt Kanzenbach <kurt@kmk-computers.de> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/avogadrolibs: Bump to 1.93.0Pacho Ramos2020-03-143-0/+101
| | | | | | Closes: https://bugs.gentoo.org/652918 Package-Manager: Portage-2.3.93, Repoman-2.3.20 Signed-off-by: Pacho Ramos <pacho@gentoo.org>