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* sci-libs/openblas-0.3.6: add index-64bit support.Mo Zhou2019-07-242-3/+16
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/12475 Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: remove 0.3.5 version.Mo Zhou2019-07-242-106/+0
| | | | | Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/libgeotiff: Drop 1.4.0Andreas Sturmlechner2019-07-232-74/+0
| | | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11
* sci-libs/libgeotiff: arm64 stable (bug #688806)Aaron Bauman2019-07-231-1/+1
| | | | | | Signed-off-by: Aaron Bauman <bman@gentoo.org> Package-Manager: Portage-2.3.69, Repoman-2.3.16 RepoMan-Options: --include-arches="arm64"
* sci-libs/cantera: 2.4.0-r1. Switch to EAPI 7band-a-prend2019-07-191-4/+4
| | | | | Closes: https://github.com/gentoo/gentoo/pull/12303 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Update/merge cantera_* patchesband-a-prend2019-07-192-6/+32
| | | | | | | | | Update "libdirname" patch with upstream [1] and merge it with "env" patch. [1] https://github.com/Cantera/cantera/pull/661 Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Fix 'fatal' warningband-a-prend2019-07-191-1/+14
| | | | | | | | | | | | | | The SConstruct script contains block that tries to evaluate 'git rev-parse --short HEAD` comand and returns the "fatal: not a git repository (or any parent up to mount point /var/tmp)" warning from git command itself if git is installed in system. It occurs because the release package archive doesn't contain ".git" directory. This behaviour doesn't affect emerge process but can confuse in the case of other issues. Closes: https://bugs.gentoo.org/689998 Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Add PYTHON_COMPAT=( python3_7 )band-a-prend2019-07-191-1/+1
| | | | | | | | | | After updated dev-util/scons (scons-3.0.5-r1.ebuild) now it's possible to build Cantera with Python 3.7. All tests of src_test() phase are passed. Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Fix ebuild to satisfy GLEP73BackAlterationband-a-prend2019-07-191-1/+1
| | | | | Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Enable build with sci-libs/sundials-3.2.xband-a-prend2019-07-192-10/+38
| | | | | | | | | | | | | | | | | | | This patch moves early applied 'sed' patches from src_prepare() to external patch-file and allows to build Cantera 2.4.0 with sci-libs/sundials-3.2.x since this version of Sundials is compatible with Sundials 3.1 and doesn't require to rebuild Cantera after it's upgrade from Sundials 3.1 to Sundials 3.2. It was tested that Cantera successfuly build with Sundials-3.2.1 (that not in portage tree yet) and internal tests passed after "ebuild compile" with Sundials 3.1.2 and "ebuild test" phase after intallation of the Sundials 3.2.1 into system. Note that Cantera 2.4.0 isn't compatible with Sundials 4.y branch so there is a restriction for RDEPEND sci-libs/sundials-4.0.0 Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Restrict RDEPEND <sci-libs/sundials-3.2.0:0=band-a-prend2019-07-191-1/+1
| | | | | | | | | | Since the Cantera 2.4.0 release was early than Sundials 3.2.0 the build script of Cantera has internal checking that installed Sundials version isn't greater than 3.1. New RDEPEND rectriction is just to avoid failure of prepare ebuild phase. Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Disable default optimization flag "-O3"band-a-prend2019-07-191-0/+130
| | | | | | | | | | By default the optimization flag "-O3" was used with warning "-Wno-inline". The addition of expicit build option optimize_flags="-Wno-inline" now disables default "-O3" optimization flag in favor of options taken from "make.conf". Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cgnslib: Fixed wrong static lib pathSlawomir Lis2019-07-191-2/+2
| | | | | | | Reported in bug #667050 Package-Manager: Portage-2.3.69, Repoman-2.3.14 Signed-off-by: Slawek Lis <slis@gentoo.org>
* sci-libs/cgnslib: version bump to 3.4.0Slawomir Lis2019-07-192-0/+77
| | | | | | | This should also fix bug #662210 Package-Manager: Portage-2.3.69, Repoman-2.3.14 Signed-off-by: Slawek Lis <slis@gentoo.org>
* */*: Add maintainer-needed comment to all unmaintained packagesMichał Górny2019-07-171-0/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/sundials: fix makefile generator for EAPI7band-a-prend2019-07-163-0/+3
| | | | | | | | Force to use emake as cmake makefile generator instead of default ninja for EAPI7 to fix Fortran configuration error. Closes: https://github.com/gentoo/gentoo/pull/12455 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: fix patchesMatthias Maier2019-07-152-2/+2
| | | | | Package-Manager: Portage-2.3.68, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: Port to EAPI 7Matthias Maier2019-07-153-9/+9
| | | | | Package-Manager: Portage-2.3.68, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: 4.1.0 version bumpband-a-prend2019-07-153-0/+84
| | | | | Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: 4.0.2 version bumpband-a-prend2019-07-153-0/+84
| | | | | Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: 3.2.1 version bumpband-a-prend2019-07-153-0/+82
| | | | | | | | | | | | | | | | | | This commit adds 'sci-libs/sundials-3.2.1' and replaces 'versionator' with 'eapi7-ver' in 'inherit' section. It seems that the block: if [[ lib != $(get_libdir) ]]; then mv "${ED%/}"/usr/lib "${ED%/}"/usr/$(get_libdir) || die fi within 'src_install()' section isn't required anymore since sundials-3.2.1 so it's removed here. Closes: https://github.com/gentoo/gentoo/pull/12309 Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/nfft: Sort KEYWORDSMichał Górny2019-07-151-2/+2
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/naga: Sort KEYWORDSMichał Górny2019-07-151-2/+2
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/mmtk: Sort KEYWORDSMichał Górny2019-07-151-2/+2
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/gdal: fix build with enabled python use flagConrad Kostecki2019-07-152-0/+436
| | | | | | | | Closes: https://bugs.gentoo.org/689110 Package-Manager: Portage-2.3.68, Repoman-2.3.16 Signed-off-by: Conrad Kostecki <conrad@kostecki.com> Closes: https://github.com/gentoo/gentoo/pull/12441 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/blis: fix unmatched keywords and maintainer type.Mo Zhou2019-07-113-9/+9
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/12420 Package-Manager: Portage-2.3.52, Repoman-2.3.12 Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: bump to 0.3.6, solving problem with gcc-9.1.0 .Mo Zhou2019-07-112-0/+106
| | | | | | | | Closes: https://github.com/gentoo/gentoo/pull/12423 Package-Manager: Portage-2.3.52, Repoman-2.3.12 Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: add the missing postinst steps and maintainer.Mo Zhou2019-07-112-10/+34
| | | | | | | | Closes: https://github.com/gentoo/gentoo/pull/12422 Package-Manager: Portage-2.3.52, Repoman-2.3.12 Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/mkl-rt: Intel MKL runtime libraries with eselect-ldso mechanism.Mo Zhou2019-07-093-0/+107
| | | | | | | | Closes: https://bugs.gentoo.org/672466 Closes: https://github.com/gentoo/gentoo/pull/12405 Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: new package with eselect-ldso feature integrated.Mo Zhou2019-07-064-0/+243
| | | | | | | | Closes: https://bugs.gentoo.org/584534 Closes: https://bugs.gentoo.org/658034 Closes: https://github.com/gentoo/gentoo/pull/12357 Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/geos: Bump to 3.7.2Aaron W. Swenson2019-07-052-0/+62
| | | | | Package-Manager: Portage-2.3.66, Repoman-2.3.11 Signed-off-by: Aaron W. Swenson <titanofold@gentoo.org>
* sci-libs/matio: remove oldTim Harder2019-07-035-160/+0
| | | | Signed-off-by: Tim Harder <radhermit@gentoo.org>
* sci-libs/matio: version bump to 1.5.16Tim Harder2019-07-032-0/+47
| | | | Signed-off-by: Tim Harder <radhermit@gentoo.org>
* sci-libs/blis: bump to 0.6.0, getting rid of a patch.Mo Zhou2019-07-034-0/+133
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/12358 Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/libqalculate: Bump subslotMatthias Maier2019-07-031-1/+1
| | | | | Package-Manager: Portage-2.3.68, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libqalculate: alpha stable wrt bug #689020Agostino Sarubbo2019-07-031-1/+1
| | | | | | Signed-off-by: Agostino Sarubbo <ago@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11 RepoMan-Options: --include-arches="alpha"
* sci-libs/libqalculate: x86 stable wrt bug #689020Agostino Sarubbo2019-07-021-1/+1
| | | | | | Signed-off-by: Agostino Sarubbo <ago@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11 RepoMan-Options: --include-arches="x86"
* sci-libs/libqalculate: amd64 stable wrt bug #689020Agostino Sarubbo2019-07-021-1/+1
| | | | | | Signed-off-by: Agostino Sarubbo <ago@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11 RepoMan-Options: --include-arches="amd64"
* sci-libs/libgeotiff: stable 1.4.1-r1 for ppc64, bug #688806Sergei Trofimovich2019-07-021-1/+1
| | | | | | Package-Manager: Portage-2.3.68, Repoman-2.3.16 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-libs/libqalculate: stable 2.8.1 for ppc, bug #689020Sergei Trofimovich2019-07-021-2/+2
| | | | | | Package-Manager: Portage-2.3.68, Repoman-2.3.16 RepoMan-Options: --include-arches="ppc" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-libs/libgeotiff: stable 1.4.1-r1 for ppc, bug #688806Sergei Trofimovich2019-07-021-1/+1
| | | | | | Package-Manager: Portage-2.3.68, Repoman-2.3.16 RepoMan-Options: --include-arches="ppc" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-libs/libqalculate: version bump to 3.2.0Matthias Maier2019-06-302-0/+65
| | | | | Package-Manager: Portage-2.3.67, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libgeotiff: x86 stable wrt bug #688806Agostino Sarubbo2019-06-281-1/+1
| | | | | | Signed-off-by: Agostino Sarubbo <ago@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11 RepoMan-Options: --include-arches="x86"
* sci-libs/libgeotiff: amd64 stable wrt bug #688806Agostino Sarubbo2019-06-281-2/+2
| | | | | | Signed-off-by: Agostino Sarubbo <ago@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11 RepoMan-Options: --include-arches="amd64"
* sci-libs/gsl: strip the cblas provider role.Benda Xu2019-06-271-0/+58
| | | | | | | | | | | | | Computationally sci-libs/gsl as a cblas provider has no significant advantage over the reference implementation. Providing sci-libs/gsl as a general cblas provider introduces possibility circular dependency. sci-libs/gsl should rather be a cblas user than a provider. Closes: https://bugs.gentoo.org/688742 Package-Manager: Portage-2.3.52, Repoman-2.3.12 RepoMan-Options: --force Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/blis: new BLIS package as an BLAS/CBLAS alternative.Mo Zhou2019-06-268-0/+381
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/12322 Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/lapack: add eselect-ldso USE flag.Benda Xu2019-06-262-8/+14
| | | | | | | | | profiles: mask eselect-ldso USE flags on fbsd and rpath ARCH. eselect-ldso USE depends on ld.so to do runtime library switching. Package-Manager: Portage-2.3.52, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/lapack: new ebuild for lapack that enables runtime switching.Mo Zhou2019-06-263-0/+117
| | | | | | | | | | This ebuild replaces {blas,cblas,lapack,lapacke}-reference ebuild files. Closes: https://github.com/gentoo/gentoo/pull/12319 Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/dcmtk: [QA] Fix missing slot dep operatorsDavid Seifert2019-06-221-4/+4
| | | | | Package-Manager: Portage-2.3.67, Repoman-2.3.15 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/dcmtk: Fix building against GCC 9David Seifert2019-06-222-1/+31
| | | | | | Closes: https://bugs.gentoo.org/686592 Package-Manager: Portage-2.3.67, Repoman-2.3.15 Signed-off-by: David Seifert <soap@gentoo.org>