diff options
Diffstat (limited to 'science.txt')
| -rw-r--r-- | science.txt | 173 |
1 files changed, 95 insertions, 78 deletions
diff --git a/science.txt b/science.txt index 8740791b474a..4bc26a758a6f 100644 --- a/science.txt +++ b/science.txt @@ -40,85 +40,102 @@ or --ff-only on the command line to override the configured default per invocation. From https://anongit.gentoo.org/git/proj/sci - 35aeb0bba..1cfb1f91a master -> origin/master -Updating 35aeb0bba..1cfb1f91a + 1cfb1f91a..89b29b2a5 master -> origin/master +Updating 1cfb1f91a..89b29b2a5 Fast-forward - profiles/package.mask | 13 - - sci-biology/EBARDenovo/EBARDenovo-1.2.2.ebuild | 24 -- - sci-biology/EBARDenovo/Manifest | 1 - - sci-biology/EBARDenovo/metadata.xml | 15 - - sci-biology/ESTate/ESTate-0.5.ebuild | 50 --- - sci-biology/ESTate/Manifest | 2 - - sci-biology/ESTate/metadata.xml | 12 - - .../{FLASH-1.2.9.ebuild => FLASH-1.2.11.ebuild} | 7 +- - sci-biology/FLASH/Manifest | 2 +- - ...GAL-0.2.2.ebuild => GAL-0.2.2_p20200508.ebuild} | 21 +- - sci-biology/GAL/Manifest | 2 +- - .../cross_genome/cross_genome-20140822.ebuild | 7 +- - sci-biology/dawg/Manifest | 1 - - sci-biology/dawg/dawg-1.1.2.ebuild | 21 -- - sci-biology/dawg/files/dawg-1.1.2-gcc43.patch | 11 - - sci-biology/dawg/metadata.xml | 8 - - sci-biology/ePCR/Manifest | 1 - - sci-biology/ePCR/ePCR-2.3.12.ebuild | 33 -- - sci-biology/ePCR/files/config.mk.patch | 18 - - sci-biology/ePCR/metadata.xml | 12 - - sci-biology/ensembl-tools/Manifest | 1 - - sci-biology/ensembl-tools/ensembl-tools-86.ebuild | 59 ---- - sci-biology/ensembl-tools/metadata.xml | 15 - - sci-biology/eval/Manifest | 2 - - sci-biology/eval/eval-2.2.8.ebuild | 48 --- - sci-biology/eval/metadata.xml | 12 - - sci-biology/fsa/fsa-1.15.9.ebuild | 11 +- - sci-biology/gap2caf/Manifest | 2 - - sci-biology/gap2caf/gap2caf-2.1.0.ebuild | 77 ----- - sci-biology/gap2caf/metadata.xml | 15 - - sci-biology/geneid/Manifest | 1 - - sci-biology/geneid/files/Makefile.patch | 11 - - sci-biology/geneid/geneid-1.4.4.ebuild | 31 -- - sci-biology/geneid/metadata.xml | 12 - - sci-biology/generecon/Manifest | 1 - - sci-biology/generecon/files/1.2.1-flags.patch | 30 -- - sci-biology/generecon/files/1.2.1-gcc4.patch | 368 --------------------- - .../generecon/files/generecon-docfiles.patch | 12 - - sci-biology/generecon/generecon-1.2.1-r1.ebuild | 31 -- - sci-biology/generecon/metadata.xml | 12 - - 40 files changed, 22 insertions(+), 990 deletions(-) - delete mode 100644 sci-biology/EBARDenovo/EBARDenovo-1.2.2.ebuild - delete mode 100644 sci-biology/EBARDenovo/Manifest - delete mode 100644 sci-biology/EBARDenovo/metadata.xml - delete mode 100644 sci-biology/ESTate/ESTate-0.5.ebuild - delete mode 100644 sci-biology/ESTate/Manifest - delete mode 100644 sci-biology/ESTate/metadata.xml - rename sci-biology/FLASH/{FLASH-1.2.9.ebuild => FLASH-1.2.11.ebuild} (73%) - rename sci-biology/GAL/{GAL-0.2.2.ebuild => GAL-0.2.2_p20200508.ebuild} (68%) - delete mode 100644 sci-biology/dawg/Manifest - delete mode 100644 sci-biology/dawg/dawg-1.1.2.ebuild - delete mode 100644 sci-biology/dawg/files/dawg-1.1.2-gcc43.patch - delete mode 100644 sci-biology/dawg/metadata.xml - delete mode 100644 sci-biology/ePCR/Manifest - delete mode 100644 sci-biology/ePCR/ePCR-2.3.12.ebuild - delete mode 100644 sci-biology/ePCR/files/config.mk.patch - delete mode 100644 sci-biology/ePCR/metadata.xml - delete mode 100644 sci-biology/ensembl-tools/Manifest - delete mode 100644 sci-biology/ensembl-tools/ensembl-tools-86.ebuild - delete mode 100644 sci-biology/ensembl-tools/metadata.xml - delete mode 100644 sci-biology/eval/Manifest - delete mode 100644 sci-biology/eval/eval-2.2.8.ebuild - delete mode 100644 sci-biology/eval/metadata.xml - delete mode 100644 sci-biology/gap2caf/Manifest - delete mode 100644 sci-biology/gap2caf/gap2caf-2.1.0.ebuild - delete mode 100644 sci-biology/gap2caf/metadata.xml - delete mode 100644 sci-biology/geneid/Manifest - delete mode 100644 sci-biology/geneid/files/Makefile.patch - delete mode 100644 sci-biology/geneid/geneid-1.4.4.ebuild - delete mode 100644 sci-biology/geneid/metadata.xml - delete mode 100644 sci-biology/generecon/Manifest - delete mode 100644 sci-biology/generecon/files/1.2.1-flags.patch - delete mode 100644 sci-biology/generecon/files/1.2.1-gcc4.patch - delete mode 100644 sci-biology/generecon/files/generecon-docfiles.patch - delete mode 100644 sci-biology/generecon/generecon-1.2.1-r1.ebuild - delete mode 100644 sci-biology/generecon/metadata.xml + dev-java/hdf-java/Manifest | 1 - + dev-java/hdf-java/files/hdf-java-2.9-shared.patch | 118 ------------------- + dev-java/hdf-java/files/hdfview.xml | 13 --- + dev-java/hdf-java/hdf-java-2.9.ebuild | 130 --------------------- + dev-java/hdf-java/metadata.xml | 20 ---- + profiles/package.mask | 22 ---- + sci-biology/BBmap/BBmap-34.97.ebuild | 43 ------- + sci-biology/BBmap/BBmap-35.92.ebuild | 42 ------- + sci-biology/BBmap/BBmap-36.02.ebuild | 42 ------- + sci-biology/BBmap/BBmap-36.86.ebuild | 42 ------- + .../{BBmap-37.67.ebuild => BBmap-38.87.ebuild} | 10 +- + sci-biology/BBmap/Manifest | 6 +- + sci-biology/BBmap/files/UnicodeToAscii.patch | 17 --- + sci-biology/aghermann/aghermann-1.1.2-r1.ebuild | 13 ++- + sci-biology/argo-bin/Manifest | 2 - + sci-biology/argo-bin/argo-bin-1.0.31.ebuild | 29 ----- + sci-biology/argo-bin/argo-bin-2.0.3.ebuild | 29 ----- + sci-biology/argo-bin/metadata.xml | 12 -- + sci-biology/bambino/Manifest | 4 - + sci-biology/bambino/bambino-1.02.ebuild | 36 ------ + sci-biology/bambino/bambino-1.06.ebuild | 36 ------ + sci-biology/bambino/metadata.xml | 12 -- + sci-biology/beagle/Manifest | 5 +- + sci-biology/beagle/beagle-4.0.ebuild | 22 ---- + sci-biology/beagle/beagle-5.1.ebuild | 30 +++++ + sci-biology/blue/Manifest | 6 - + sci-biology/blue/blue-1.1.2.ebuild | 37 ------ + sci-biology/blue/blue-1.1.3.ebuild | 37 ------ + sci-biology/blue/metadata.xml | 12 -- + sci-biology/cd-hit-auxtools/Manifest | 2 - + .../cd-hit-auxtools/cd-hit-auxtools-0.5.ebuild | 43 ------- + sci-biology/cd-hit-auxtools/files/0.5-gentoo.patch | 47 -------- + sci-biology/cd-hit-auxtools/metadata.xml | 12 -- + sci-biology/cegma/Manifest | 1 - + sci-biology/cegma/cegma-2.5.ebuild | 38 ------ + sci-biology/cegma/metadata.xml | 12 -- + sci-biology/cgview-bin/Manifest | 2 +- + ...bin-20131130.ebuild => cgview-bin-1.0.0.ebuild} | 29 ++--- + sci-biology/clover/Manifest | 2 - + sci-biology/clover/clover-2011.10.24.ebuild | 39 ------- + sci-biology/cnrun/Manifest | 2 +- + sci-biology/cnrun/cnrun-2.1.0-r1.ebuild | 4 +- + sci-biology/conform-gt/Manifest | 2 +- + sci-biology/conform-gt/conform-gt-1174.ebuild | 24 ++-- + sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild | 7 +- + sci-biology/pufferfish/Manifest | 4 + + .../pufferfish/files/pufferfish-do-not-fetch.patch | 31 +++++ + sci-biology/{clover => pufferfish}/metadata.xml | 6 +- + sci-biology/pufferfish/pufferfish-1.4.0.ebuild | 35 ++++++ + sci-biology/salmon/Manifest | 1 + + sci-biology/salmon/salmon-1.4.0.ebuild | 40 +++++++ + sci-biology/salmon/salmon-9999.ebuild | 81 ++++--------- + 52 files changed, 214 insertions(+), 1078 deletions(-) + delete mode 100644 dev-java/hdf-java/Manifest + delete mode 100644 dev-java/hdf-java/files/hdf-java-2.9-shared.patch + delete mode 100644 dev-java/hdf-java/files/hdfview.xml + delete mode 100644 dev-java/hdf-java/hdf-java-2.9.ebuild + delete mode 100644 dev-java/hdf-java/metadata.xml + delete mode 100644 sci-biology/BBmap/BBmap-34.97.ebuild + delete mode 100644 sci-biology/BBmap/BBmap-35.92.ebuild + delete mode 100644 sci-biology/BBmap/BBmap-36.02.ebuild + delete mode 100644 sci-biology/BBmap/BBmap-36.86.ebuild + rename sci-biology/BBmap/{BBmap-37.67.ebuild => BBmap-38.87.ebuild} (85%) + delete mode 100644 sci-biology/BBmap/files/UnicodeToAscii.patch + delete mode 100644 sci-biology/argo-bin/Manifest + delete mode 100644 sci-biology/argo-bin/argo-bin-1.0.31.ebuild + delete mode 100644 sci-biology/argo-bin/argo-bin-2.0.3.ebuild + delete mode 100644 sci-biology/argo-bin/metadata.xml + delete mode 100644 sci-biology/bambino/Manifest + delete mode 100644 sci-biology/bambino/bambino-1.02.ebuild + delete mode 100644 sci-biology/bambino/bambino-1.06.ebuild + delete mode 100644 sci-biology/bambino/metadata.xml + delete mode 100644 sci-biology/beagle/beagle-4.0.ebuild + create mode 100644 sci-biology/beagle/beagle-5.1.ebuild + delete mode 100644 sci-biology/blue/Manifest + delete mode 100644 sci-biology/blue/blue-1.1.2.ebuild + delete mode 100644 sci-biology/blue/blue-1.1.3.ebuild + delete mode 100644 sci-biology/blue/metadata.xml + delete mode 100644 sci-biology/cd-hit-auxtools/Manifest + delete mode 100644 sci-biology/cd-hit-auxtools/cd-hit-auxtools-0.5.ebuild + delete mode 100644 sci-biology/cd-hit-auxtools/files/0.5-gentoo.patch + delete mode 100644 sci-biology/cd-hit-auxtools/metadata.xml + delete mode 100644 sci-biology/cegma/Manifest + delete mode 100644 sci-biology/cegma/cegma-2.5.ebuild + delete mode 100644 sci-biology/cegma/metadata.xml + rename sci-biology/cgview-bin/{cgview-bin-20131130.ebuild => cgview-bin-1.0.0.ebuild} (65%) + delete mode 100644 sci-biology/clover/Manifest + delete mode 100644 sci-biology/clover/clover-2011.10.24.ebuild + create mode 100644 sci-biology/pufferfish/Manifest + create mode 100644 sci-biology/pufferfish/files/pufferfish-do-not-fetch.patch + rename sci-biology/{clover => pufferfish}/metadata.xml (74%) + create mode 100644 sci-biology/pufferfish/pufferfish-1.4.0.ebuild + create mode 100644 sci-biology/salmon/salmon-1.4.0.ebuild *** syncing science *** synced science * Sync succeeded |