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{'description': {'en': 'The Gentoo Science Overlay is intended as a place to '
'work\n'
' outside of the main portage tree on experimental '
'ebuilds. Our aim is to\n'
' increase the rate of development of scientific '
'packages for Gentoo, but\n'
' ebuilds in this repository are by their very '
'nature more experimental. If\n'
' you wish to use them you should be willing to help '
'test and report\n'
' bugs. For contribution read '
'https://wiki.gentoo.org/wiki/Project:Science/Contributing\n'
' '},
'feed': ['https://cgit.gentoo.org/proj/sci.git/atom/',
'https://github.com/gentoo-science/sci/commits/master.atom'],
'homepage': 'https://wiki.gentoo.org/wiki/Project:Science',
'name': 'science',
'owner': [{'email': 'sci@gentoo.org', 'name': 'sci', 'type': 'project'}],
'quality': 'experimental',
'source': [{'type': 'git',
'uri': 'https://anongit.gentoo.org/git/proj/sci.git'},
{'type': 'git', 'uri': 'git://anongit.gentoo.org/proj/sci.git'},
{'type': 'git', 'uri': 'git+ssh://git@git.gentoo.org/proj/sci.git'},
{'type': 'git', 'uri': 'https://github.com/gentoo-science/sci.git'},
{'type': 'git', 'uri': 'git://github.com/gentoo-science/sci.git'},
{'type': 'git', 'uri': 'git@github.com:gentoo-science/sci.git'}],
'status': 'official'}
$ pmaint sync science
warning: Pulling without specifying how to reconcile divergent branches is
discouraged. You can squelch this message by running one of the following
commands sometime before your next pull:
git config pull.rebase false # merge (the default strategy)
git config pull.rebase true # rebase
git config pull.ff only # fast-forward only
You can replace "git config" with "git config --global" to set a default
preference for all repositories. You can also pass --rebase, --no-rebase,
or --ff-only on the command line to override the configured default per
invocation.
From https://anongit.gentoo.org/git/proj/sci
c389cf1c4..3f82bedc5 master -> origin/master
Updating c389cf1c4..3f82bedc5
Fast-forward
sci-chemistry/ambertools/Manifest | 3 -
.../ambertools/ambertools-12_p38-r1.ebuild | 164 ---
sci-chemistry/ambertools/ambertools-15_p6.ebuild | 190 ---
.../ambertools/files/ambertools-12-gentoo.patch | 1345 ------------------
.../files/ambertools-12_p38-format-security.patch | 100 --
.../ambertools/files/ambertools-12_p38-gcc5.patch | 28 -
.../ambertools/files/ambertools-15-gentoo.patch | 1428 --------------------
.../ambertools/files/ambertools-15-update.1.patch | 118 --
.../ambertools/files/ambertools-15-update.2.patch | 56 -
.../ambertools/files/ambertools-15-update.3.patch | 95 --
.../ambertools/files/ambertools-15-update.4.patch | 908 -------------
.../ambertools/files/ambertools-15-update.5.patch | 25 -
.../ambertools/files/ambertools-15-update.6.patch | 59 -
sci-chemistry/ambertools/metadata.xml | 12 -
14 files changed, 4531 deletions(-)
delete mode 100644 sci-chemistry/ambertools/Manifest
delete mode 100644 sci-chemistry/ambertools/ambertools-12_p38-r1.ebuild
delete mode 100644 sci-chemistry/ambertools/ambertools-15_p6.ebuild
delete mode 100644 sci-chemistry/ambertools/files/ambertools-12-gentoo.patch
delete mode 100644 sci-chemistry/ambertools/files/ambertools-12_p38-format-security.patch
delete mode 100644 sci-chemistry/ambertools/files/ambertools-12_p38-gcc5.patch
delete mode 100644 sci-chemistry/ambertools/files/ambertools-15-gentoo.patch
delete mode 100644 sci-chemistry/ambertools/files/ambertools-15-update.1.patch
delete mode 100644 sci-chemistry/ambertools/files/ambertools-15-update.2.patch
delete mode 100644 sci-chemistry/ambertools/files/ambertools-15-update.3.patch
delete mode 100644 sci-chemistry/ambertools/files/ambertools-15-update.4.patch
delete mode 100644 sci-chemistry/ambertools/files/ambertools-15-update.5.patch
delete mode 100644 sci-chemistry/ambertools/files/ambertools-15-update.6.patch
delete mode 100644 sci-chemistry/ambertools/metadata.xml
*** syncing science
*** synced science
* Sync succeeded
$ git log --format=%ci -1
$ git show -q --pretty=format:%G? HEAD
$ pmaint regen --use-local-desc --pkg-desc-index -t 1 science
* sci-biology/Atlas2-1.4.3: failed parsing REQUIRED_USE: '|| ( )' is unparseable
* sci-biology/bio-cd-hit-report-0.1.0: failed parsing REQUIRED_USE: '|| ( )' is unparseable
* sci-biology/full_lengther_next-0.6.2: failed parsing REQUIRED_USE: '|| ( )' is unparseable
* sci-biology/scbi_blast-0.0.43: failed parsing REQUIRED_USE: '|| ( )' is unparseable
* sci-biology/scbi_fasta-0.1.9: failed parsing REQUIRED_USE: '|| ( )' is unparseable
* sci-biology/scbi_fastq-0.0.22: failed parsing REQUIRED_USE: '|| ( )' is unparseable
* sci-biology/scbi_mapreduce-0.0.45: failed parsing REQUIRED_USE: '|| ( )' is unparseable
* sci-biology/scbi_plot-0.0.7: failed parsing REQUIRED_USE: '|| ( )' is unparseable
* sci-biology/scbi_zcat-0.0.2: failed parsing REQUIRED_USE: '|| ( )' is unparseable
* Cache regen failed with 1
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