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diff --git a/sci-biology/ncbi-tools/ChangeLog b/sci-biology/ncbi-tools/ChangeLog
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--- /dev/null
+++ b/sci-biology/ncbi-tools/ChangeLog
@@ -0,0 +1,334 @@
+# ChangeLog for sci-biology/ncbi-tools
+# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.53 2007/06/05 11:00:49 armin76 Exp $
+
+  05 Jun 2007; Raúl Porcel <armin76@gentoo.org> ncbi-tools-20060507.ebuild:
+  alpha stable wrt #152292
+
+  10 Mar 2007; Olivier Fisette <ribosome@gentoo.org>
+  +files/ncbi-tools-extra_vib.patch:
+  Added missing patch. Thanks to Walter Meinl <wuno@lsvw.de> for reporting
+  (bug #170202).
+
+*ncbi-tools-20061015-r1 (09 Mar 2007)
+
+  09 Mar 2007; Olivier Fisette <ribosome@gentoo.org>
+  -ncbi-tools-20061015.ebuild, +ncbi-tools-20061015-r1.ebuild:
+  Install ans2all utility. Added support for compiling/installing arbitrary
+  NCBI utilities. Thanks to José María Fernández González
+  <jmfernandez@cnio.es> for his work (see bug #169822). Pruned old version.
+
+  03 Nov 2006; Olivier Fisette <ribosome@gentoo.org>
+  -ncbi-tools-20050605-r2.ebuild:
+  Pruned old version.
+
+*ncbi-tools-20061015 (03 Nov 2006)
+
+  03 Nov 2006; Olivier Fisette <ribosome@gentoo.org>
+  +ncbi-tools-20061015.ebuild:
+  New upstream version.
+
+  30 Oct 2006; Christian Faulhammer <opfer@gentoo.org>
+  ncbi-tools-20060507.ebuild:
+  stable x86 as requested in bug #152292
+
+  25 Oct 2006; Lars Weiler <pylon@gentoo.org> ncbi-tools-20060507.ebuild:
+  Stable on ppc; bug #152292.
+
+  25 Oct 2006; Fabian Groffen <grobian@gentoo.org>
+  ncbi-tools-20050605.ebuild, ncbi-tools-20050605-r2.ebuild:
+  Dropped ppc-macos, see you in prefix.
+
+  24 Oct 2006; Fabian Groffen <grobian@gentoo.org>
+  ncbi-tools-20060507.ebuild:
+  Dropped ppc-macos, we don't have pmake
+
+  24 Oct 2006; Jeff Gardner <je_fro@gentoo.org> ncbi-tools-20060507.ebuild:
+  Stable on amd64.
+
+  23 Oct 2006; Markus Rothe <corsair@gentoo.org> ncbi-tools-20060507.ebuild:
+  Stable on ppc64; bug #152292
+
+  23 Oct 2006; Jeff Gardner <je_fro@gentoo.org> ncbi-tools-20060507.ebuild:
+  Stable on sparc - bug #152292
+
+  27 Jun 2006; Brent Baude <ranger@gentoo.org> ncbi-tools-20060507.ebuild:
+  Keywording ncbi-tools-20060507 ~ppc64 for bug #138082
+
+  27 Jun 2006; Olivier Fisette <ribosome@gentoo.org>
+  -files/ncbi-tools-20050605-lop.patch, +files/ncbi-tools-lop.patch,
+  ncbi-tools-20050605.ebuild, ncbi-tools-20050605-r2.ebuild,
+  ncbi-tools-20060507.ebuild:
+  Fixed ppc64 lop patch (my mistake).
+
+*ncbi-tools-20060507 (26 Jun 2006)
+
+  26 Jun 2006; Olivier Fisette <ribosome@gentoo.org>
+  +files/ncbi-tools-asn2all.patch, +ncbi-tools-20060507.ebuild:
+  New upstream version. Switched from GNU make to pmake as GNU make 3.81 is
+  confused by some Makefiles (fixes bug #136904, thanks to Greg Wilson for
+  reporting). Compile and install asn2all (fixes bug #136206, thanks to José
+  María Fernández González for the suggestion). Minor bugfixes and ebuild
+  clean-up. ppc64 keyword dropped as pmake is not available for that arch.
+
+  01 Feb 2006; Donnie Berkholz <spyderous@gentoo.org>;
+  ncbi-tools-20050605.ebuild, ncbi-tools-20050605-r2.ebuild:
+  (#121066) Port to modular X. Add some die messages to -r2 so the die's
+  aren't completely unhelpful. Fix the path expansion for html docs so it
+  doesn't break the installation -- not sure how it got committed as is:
+  {*.html *.gif} is missing a comma.
+
+  21 Jan 2006; Olivier Fisette <ribosome@gentoo.org>
+  -ncbi-tools-20050605-r1.ebuild:
+  Removed buggy version.
+
+*ncbi-tools-20050605-r2 (14 Dec 2005)
+
+  14 Dec 2005; Olivier Fisette <ribosome@gentoo.org>
+  +ncbi-tools-20050605-r2.ebuild:
+  Fixed file collisions with "dev-libs/libpcre" (bug #115463).
+
+  16 Nov 2005; Olivier Fisette <ribosome@gentoo.org>
+  ncbi-tools-20050605-r1.ebuild:
+  Readded ~sparc (closes bug #111807).
+
+  15 Nov 2005; Fernando J. Pereda <ferdy@gentoo.org>
+  ncbi-tools-20050605-r1.ebuild:
+  re-add ~alpha wrt bug #111807
+
+*ncbi-tools-20050605-r1 (15 Nov 2005)
+
+  15 Nov 2005; Olivier Fisette <ribosome@gentoo.org>
+  +ncbi-tools-20050605-r1.ebuild:
+  Added MPI support for the BLAST family of programs. Thanks to Brady
+  Catherman <bradyc@uidaho.edu> for his work (fixes bug #111807).
+
+  09 Nov 2005; Jason Wever <weeve@gentoo.org> ncbi-tools-20050605.ebuild:
+  Stable on SPARC wrt bug #108334.
+
+  22 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -files/21ncbi,
+  -ncbi-tools-20041020-r1.ebuild, -ncbi-tools-20050429.ebuild:
+  Pruning old versions.
+
+  22 Oct 2005; Fabian Groffen <grobian@gentoo.org>
+  ncbi-tools-20050605.ebuild:
+  Marked ppc-macos per bug #108334
+
+  18 Oct 2005; Aron Griffis <agriffis@gentoo.org>
+  ncbi-tools-20050605.ebuild:
+  Mark 20050605 stable on alpha
+
+  12 Oct 2005; Michael Hanselmann <hansmi@gentoo.org>
+  ncbi-tools-20050605.ebuild:
+  Stable on ppc.
+
+  11 Oct 2005; Luis Medinas <metalgod@gentoo.org>
+  ncbi-tools-20050605.ebuild:
+  Marked Stable on amd64
+
+  09 Oct 2005; Mark Loeser <halcy0n@gentoo.org> ncbi-tools-20050605.ebuild:
+  Stable on x86
+
+  07 Oct 2005; Brent Baude <ranger@gentoo.org> ncbi-tools-20050605.ebuild:
+  Marking ncbi-tools-200506 ppc64 stable for bug 108334
+
+  19 Sep 2005; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
+  Maintainer changed from Stephen Diener (MIA) to Olivier Fisette.
+
+  16 Sep 2005; Aron Griffis <agriffis@gentoo.org>
+  ncbi-tools-20050429.ebuild:
+  Mark 20050429 stable on alpha
+
+  19 Aug 2005; Michael Hanselmann <hansmi@gentoo.org>
+  ncbi-tools-20050429.ebuild:
+  Removed from ppc (xlc not available).
+
+  09 Aug 2005; Brent Baude <ranger@gentoo.org>
+  +files/ncbi-tools-20050605-lop.patch,
+  -files/ncbi-tools-20050605-lop.patch.gz, ncbi-tools-20050605.ebuild:
+  For the ebuild ncbi-tools-20050605, I was asked to remove the gz patch and
+  submit it as plain text. This commit will remove the gz patch and replace it
+  with a plain text one. The patch name change is also reflected in the
+  ebuild.
+
+  08 Aug 2005; Brent Baude <ranger@gentoo.org>
+  +files/ncbi-tools-20050605-lop.patch.gz, ncbi-tools-20050605.ebuild:
+  Added patch for 20050506 which when ppc64, will patch the makefile to use
+  gcc instead of the default xlc (IBM compiler) which doesnt exist on gentoo.
+
+  08 Aug 2005; Brent Baude <ranger@gentoo.org> ncbi-tools-20050429.ebuild:
+  ncbi-tools-20050429.ebuild does not compile on ppc64; will fix later ebuild
+
+*ncbi-tools-20050605 (06 Aug 2005)
+
+  06 Aug 2005; Olivier Fisette <ribosome@gentoo.org>
+  -ncbi-tools-20040616.ebuild, ncbi-tools-20050429.ebuild,
+  +ncbi-tools-20050605.ebuild:
+  New version. Added 20050429 to x86. Removed old version.
+
+  09 Jun 2005; Markus Rothe <corsair@gentoo.org>
+  ncbi-tools-20041020-r1.ebuild:
+  Stable on ppc64
+
+  02 Jun 2005; Olivier Fisette <ribosome@gentoo.org> ChangeLog:
+  Use "virtual/motif" instead of "x11-libs/openmotif".
+
+  16 May 2005; Olivier Fisette <ribosome@gentoo.org>
+  ncbi-tools-20050429.ebuild:
+  Fixed CFLAGS not being applied properly (bug #92564).
+
+*ncbi-tools-20050429 (13 May 2005)
+
+  13 May 2005; Olivier Fisette <ribosome@gentoo.org>
+  +ncbi-tools-20050429.ebuild:
+  New version.
+
+  29 Apr 2005; Markus Rothe <corsair@gentoo.org>
+  ncbi-tools-20041020-r1.ebuild:
+  Added ~ppc64 to KEYWORDS
+
+  24 Apr 2005; Michael Hanselmann <hansmi@gentoo.org>
+  ncbi-tools-20041020-r1.ebuild:
+  Stable on ppc.
+
+*ncbi-tools-20041020-r1 (06 Mar 2005)
+
+  06 Mar 2005; Olivier Fisette <ribosome@gentoo.org> +files/21ncbi-r1,
+  +ncbi-tools-20041020-r1.ebuild, -ncbi-tools-20041020.ebuild:
+  Added the "BLASTMAT" environment variable to the env.d file.
+
+  02 Mar 2005; Lina Pezzella <j4rg0n@gentoo.org> ncbi-tools-20041020.ebuild:
+  Stable ppc-macos
+
+  01 Mar 2005; Olivier Fisette <ribosome@gentoo.org>
+  ncbi-tools-20041020.ebuild:
+  Added to x86.
+
+  02 Feb 2005; Lina Pezzella <j4rg0n@gentoo.org> ncbi-tools-20040616.ebuild:
+  Stable ppc-macos
+
+  30 Jan 2005; Olivier Fisette <ribosome@gentoo.org>
+  ncbi-tools-20041020.ebuild:
+  Ebuild cleanup.
+
+*ncbi-tools-20041020 (18 Jan 2005)
+
+  18 Jan 2005; Olivier Fisette <ribosome@gentoo.org>
+  +ncbi-tools-20041020.ebuild:
+  New version.
+
+  02 Jan 2005; Olivier Fisette <ribosome@gentoo.org> :
+  Added to x86. Use toolchain-funcs rather than gcc eclass.
+
+  29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
+  Change encoding to UTF-8 for GLEP 31 compliance
+
+*ncbi-tools-20040616 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +files/21ncbi, +files/ncbirc, +ncbi-tools-20040616.ebuild:
+  Moved from app-sci/ncbi-tools to sci-biology/ncbi-tools.
+
+  30 Nov 2004; <j4rg0n@gentoo.org> ncbi-tools-20040616.ebuild:
+  Keyworded ~ppc-macos.
+
+  22 Nov 2004; Karol Wojtaszek <sekretarz@gentoo.org>
+  ncbi-tools-20040616.ebuild:
+  Added to ~amd64
+
+  14 Oct 2004; Olivier Fisette <ribosome@gentoo.org>
+  ncbi-tools-20040616.ebuild:
+  Use gcc-getCC from gcc.eclass rather than ${CC}.
+
+  04 Oct 2004; Olivier Fisette <ribosome@gentoo.org>
+  ncbi-tools-20040616.ebuild:
+  Fixed potential bug in "SRC_URI".
+
+*ncbi-tools-20040616 (03 Oct 2004)
+
+  03 Oct 2004; Olivier Fisette <ribosome@gentoo.org> files/21ncbi,
+  -files/dot-ncbirc, +files/ncbirc, -ncbi-tools-20031103.ebuild,
+  -ncbi-tools-20040202-r1.ebuild, +ncbi-tools-20040616.ebuild:
+  Updated version and new ebuild. This fixes bug #65941.
+
+  02 Jun 2004; Aron Griffis <agriffis@gentoo.org> ncbi-tools-20031103.ebuild,
+  ncbi-tools-20040202-r1.ebuild:
+  Fix use invocation
+
+  05 May 2004; Bryan Østergaard <kloeri@gentoo.org>
+  ncbi-tools-20040202-r1.ebuild:
+  Stable on alpha.
+
+  19 Apr 2004; Patrick Kursawe <phosphan@gentoo.org>
+  ncbi-tools-04222003-r2.ebuild, ncbi-tools-20030422.ebuild,
+  ncbi-tools-20031103.ebuild, ncbi-tools-20040202-r1.ebuild,
+  ncbi-tools-20040202.ebuild:
+  Cleanup, removing S=... with no effect
+
+  30 Mar 2004; Donnie Berkholz <spyderous@gentoo.org>;
+  ncbi-tools-04222003-r2.ebuild, ncbi-tools-20030422.ebuild,
+  ncbi-tools-20031103.ebuild, ncbi-tools-20040202-r1.ebuild,
+  ncbi-tools-20040202.ebuild:
+  Change x11-base/xfree dependency to virtual/x11.
+
+  21 Mar 2004; Martin Holzer <mholzer@gentoo.org>
+  ncbi-tools-04222003-r2.ebuild, ncbi-tools-20030422.ebuild,
+  ncbi-tools-20031103.ebuild, ncbi-tools-20040202-r1.ebuild,
+  ncbi-tools-20040202.ebuild:
+  adding categorie. see 45110 for details
+
+*ncbi-tools-20040202-r1 (06 Feb 2004)
+
+  06 Feb 2004; Stephen Diener <sediener@gentoo.org>
+  ncbi-tools-20040202-r1.ebuild:
+  Replaced buggy tarball with new one.  Bumped revision to propogate.
+
+*ncbi-tools-20040202 (05 Feb 2004)
+
+  05 Feb 2004; Stephen Diener <sediener@gentoo.org>
+  ncbi-tools-04222003-r1.ebuild, ncbi-tools-04222003.ebuild,
+  ncbi-tools-20030422.ebuild, ncbi-tools-20031103.ebuild,
+  ncbi-tools-20040202.ebuild:
+  Bumped 20031103 to x86, removed old ebuilds, added new release 20040202
+
+*ncbi-tools-20040202 (04 Feb 2004)
+
+  04 Feb 2004; Stephen Diener <sediener@gentoo.org>
+  ncbi-tools-20031103.ebuild, ncbi-tools-20040202.ebuild:
+  Version bump.  Changes -O3 -> -O2 so X11 apps will work.
+
+  11 Jan 2004; Heinrich Wendel <lanius@gentoo.org>
+  ncbi-tools-04222003-r1.ebuild, ncbi-tools-04222003-r2.ebuild,
+  ncbi-tools-20030422.ebuild, ncbi-tools-20031103.ebuild:
+  fixed motif dep
+
+*ncbi-tools-20031103 (13 Dec 2003)
+
+  13 Dec 2003; Stephen Diener <sediener@gentoo.org>
+  ncbi-tools-20031103.ebuild:
+  Added november release of ncbi-tools (blast-2.2.6 included);
+  Added support for -X
+
+*ncbi-tools-20030422 (11 Nov 2003)
+
+  11 Nov 2003; <sediener@gentoo.org> ncbi-tools-20030422.ebuild:
+  added bl2seq to list of installed binaries; changed date format from 04222003
+  to 20030422; renamed files to have date appended to not collide and changed
+  SRC_URI to mirror://gentoo/
+
+*ncbi-tools-04222003-r2 (08 Oct 2003)
+
+  08 Oct 2003; Robin H. Johnson <robbat2@gentoo.org>
+  ncbi-tools-04222003-r2.ebuild:
+  modified patch from #30656, corrected two pathes in the postinst message
+
+*ncbi-tools-04222003-r1 (05 May 2003)
+
+  05 May 2003; Jon Portnoy <avenj@gentoo.org> ncbi-tools-04222003-r1.ebuild :
+  A few enhancements from Gontran Zepeda <gontran@gontran.net>.
+
+*ncbi-tools-04222003 (03 May 2003)
+
+  03 May 2003; Jon Portnoy <avenj@gentoo.org> ncbi-tools-04222003 :
+  Initial important. Ebuild submitted by Steve Diener 
+  <sediener@unity.ncsu.edu>.
diff --git a/sci-biology/ncbi-tools/Manifest b/sci-biology/ncbi-tools/Manifest
new file mode 100644
index 0000000..58ff038
--- /dev/null
+++ b/sci-biology/ncbi-tools/Manifest
@@ -0,0 +1,38 @@
+AUX 21ncbi-r1 232 RMD160 ba65fe937c9a29f4cc185d99db18522343bbb28b SHA1 5674f379f7a70e71394bca272fedd72a1622a7da SHA256 55d5d53c177200d4a9369102d3e2d8ef232f09dd8559aab6c6e4d2173e8bb411
+MD5 a5f54430f6f7422d75320e91068cae0b files/21ncbi-r1 232
+RMD160 ba65fe937c9a29f4cc185d99db18522343bbb28b files/21ncbi-r1 232
+SHA256 55d5d53c177200d4a9369102d3e2d8ef232f09dd8559aab6c6e4d2173e8bb411 files/21ncbi-r1 232
+AUX ncbi-tools-asn2all.patch 1190 RMD160 3aaccc677bd8b9bad6c6424f5080c71cdac553d7 SHA1 ae22c77cfcd7d416a89ea3fe1e0331264473669d SHA256 e2fd71fdaa07b9e1c9cf646b2d3aa02c2ec822d41dcd45cadfced4164f458bed
+MD5 b89cb833887b3e3efda83d074b4b8edb files/ncbi-tools-asn2all.patch 1190
+RMD160 3aaccc677bd8b9bad6c6424f5080c71cdac553d7 files/ncbi-tools-asn2all.patch 1190
+SHA256 e2fd71fdaa07b9e1c9cf646b2d3aa02c2ec822d41dcd45cadfced4164f458bed files/ncbi-tools-asn2all.patch 1190
+AUX ncbi-tools-extra_vib.patch 1393 RMD160 05e2dcf17b6af9475625eb0aa0be6bc96071a923 SHA1 bb92aeada6786d4573f9ad98e3d50b4a4201ba10 SHA256 b7639937d59c8bd636c6b02a65a4469d188645b9a10fffd0c8680fb861a7a8e1
+MD5 81e003b746faf22d3f1b1df37ffdcf41 files/ncbi-tools-extra_vib.patch 1393
+RMD160 05e2dcf17b6af9475625eb0aa0be6bc96071a923 files/ncbi-tools-extra_vib.patch 1393
+SHA256 b7639937d59c8bd636c6b02a65a4469d188645b9a10fffd0c8680fb861a7a8e1 files/ncbi-tools-extra_vib.patch 1393
+AUX ncbi-tools-lop.patch 701 RMD160 1b9d8d196b1d4f27b090e616c9ac03cb9b4e6a09 SHA1 be28d340be72b9840342b407d95dc2a558e39de9 SHA256 9e5c57e944d23920f196f36912933653c236998729f69f28be8b55964865dfbc
+MD5 6b62beda180ee6d7d4d4a52507acc3ff files/ncbi-tools-lop.patch 701
+RMD160 1b9d8d196b1d4f27b090e616c9ac03cb9b4e6a09 files/ncbi-tools-lop.patch 701
+SHA256 9e5c57e944d23920f196f36912933653c236998729f69f28be8b55964865dfbc files/ncbi-tools-lop.patch 701
+AUX ncbirc 33 RMD160 3bfa36288b608b4e29252ad1972bb8c06cded3e1 SHA1 eb14976d464f4fa0e14085c8dd58886b0c684a56 SHA256 8687909c83658049cbad656b6d99c8e6143365286e2fa981fbdddc87b178ab8e
+MD5 23986a001c85eb8c2c319aacfa9cb40c files/ncbirc 33
+RMD160 3bfa36288b608b4e29252ad1972bb8c06cded3e1 files/ncbirc 33
+SHA256 8687909c83658049cbad656b6d99c8e6143365286e2fa981fbdddc87b178ab8e files/ncbirc 33
+DIST mpiblast-20060625.tar.gz 165096 RMD160 22a9bda3ea63076c1411f8c361c7bbf84213e215 SHA1 e0acdde2770973b752396a6ba1a99b47ea4ddcde SHA256 49eb549196b306d6c152b12522ff2ca08163f4d3a2582118790c88c327c15097
+DIST ncbi-tools-20070826.tar.gz 17076175 RMD160 00daadd503bf729c15ada0008e305492a076fe15 SHA1 5e61f4f73ef52d145d0df86bb00f03f2db833ee9 SHA256 58be3bb76c4a112217c414fd5d05de58a893cfd6ace3856629616a97a61ee4c8
+DIST ncbi-tools-sdk-doc.tar.bz2 263568 RMD160 f9c4d610c2535ec2b4afae6ecef065fd5746910b SHA1 6fd259b1fc75684db43bd817fc4720e92f56e81c SHA256 352ec02e527f24d03bafb7d40b31c98e0a6f931bed34c4933c5f7153b8034cb2
+EBUILD ncbi-tools-20070826.ebuild 6379 RMD160 a1bdac06154ed9ced4a70231470487c491b504a8 SHA1 dd57b5279a538aa5b843f50ed09ebfcfaa4f1eb2 SHA256 846d90c089f5496d524ae814b6d4e553c989f9c215c3d3cf7163314d33ed3a4f
+MD5 07e2b6278efd8b172d9827478646d10f ncbi-tools-20070826.ebuild 6379
+RMD160 a1bdac06154ed9ced4a70231470487c491b504a8 ncbi-tools-20070826.ebuild 6379
+SHA256 846d90c089f5496d524ae814b6d4e553c989f9c215c3d3cf7163314d33ed3a4f ncbi-tools-20070826.ebuild 6379
+MISC ChangeLog 12046 RMD160 f5da07dae177d685279cfc8cb1e808195a324d59 SHA1 2c500e98f4078d01e7e07bb5fbec1b9969b54947 SHA256 9c61bf118f77126decdf8f68383fd4581488e411c23e51e9543487412d5754a2
+MD5 84765ef98775eb5a866921708cff3f5e ChangeLog 12046
+RMD160 f5da07dae177d685279cfc8cb1e808195a324d59 ChangeLog 12046
+SHA256 9c61bf118f77126decdf8f68383fd4581488e411c23e51e9543487412d5754a2 ChangeLog 12046
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
+MD5 03f6be617d48b4f2a475c697390a2a99 files/digest-ncbi-tools-20070826 706
+RMD160 50e74fe0a0f4174a503bc4deed45c3527326bf0d files/digest-ncbi-tools-20070826 706
+SHA256 61f6572f086b8f5fb0728a44d49814b6fb003579b173e88d7da077ebd8ac27ae files/digest-ncbi-tools-20070826 706
diff --git a/sci-biology/ncbi-tools/files/21ncbi-r1 b/sci-biology/ncbi-tools/files/21ncbi-r1
new file mode 100644
index 0000000..d4de68e
--- /dev/null
+++ b/sci-biology/ncbi-tools/files/21ncbi-r1
@@ -0,0 +1,6 @@
+# Location of the formatdb data sets
+BLASTDB="/usr/share/ncbi/formatdb"
+# Location of the BLAST matrixes.
+BLASTMAT="/usr/share/ncbi/data"
+# Location of the ".ncbi.rc" file which sets the default path for shared data.
+NCBI=/etc/ncbi
diff --git a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015-r1 b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015-r1
new file mode 100644
index 0000000..a80231e
--- /dev/null
+++ b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015-r1
@@ -0,0 +1,8 @@
+MD5 14ee6d612d0d86e0dee7eb5f0c38839f mpiblast-20060625.tar.gz 165096
+RMD160 22a9bda3ea63076c1411f8c361c7bbf84213e215 mpiblast-20060625.tar.gz 165096
+SHA256 49eb549196b306d6c152b12522ff2ca08163f4d3a2582118790c88c327c15097 mpiblast-20060625.tar.gz 165096
+MD5 8eca84753fd7a1d39bab256a4944f65e ncbi-tools-20061015.tar.gz 15772715
+RMD160 034124b92d4320be31b2bacbb0966270cbfa63b3 ncbi-tools-20061015.tar.gz 15772715
+SHA256 0833f4b4f0389f75cdc0754329b3b8c1420c5b9abd7f3d8e352b4c134b3446de ncbi-tools-20061015.tar.gz 15772715
+RMD160 f9c4d610c2535ec2b4afae6ecef065fd5746910b ncbi-tools-sdk-doc.tar.bz2 263568
+SHA256 352ec02e527f24d03bafb7d40b31c98e0a6f931bed34c4933c5f7153b8034cb2 ncbi-tools-sdk-doc.tar.bz2 263568
diff --git a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20070826 b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20070826
new file mode 100644
index 0000000..3c82f07
--- /dev/null
+++ b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20070826
@@ -0,0 +1,8 @@
+MD5 14ee6d612d0d86e0dee7eb5f0c38839f mpiblast-20060625.tar.gz 165096
+RMD160 22a9bda3ea63076c1411f8c361c7bbf84213e215 mpiblast-20060625.tar.gz 165096
+SHA256 49eb549196b306d6c152b12522ff2ca08163f4d3a2582118790c88c327c15097 mpiblast-20060625.tar.gz 165096
+MD5 c17f7b08c12823e4320661894110dcb1 ncbi-tools-20070826.tar.gz 17076175
+RMD160 00daadd503bf729c15ada0008e305492a076fe15 ncbi-tools-20070826.tar.gz 17076175
+SHA256 58be3bb76c4a112217c414fd5d05de58a893cfd6ace3856629616a97a61ee4c8 ncbi-tools-20070826.tar.gz 17076175
+RMD160 f9c4d610c2535ec2b4afae6ecef065fd5746910b ncbi-tools-sdk-doc.tar.bz2 263568
+SHA256 352ec02e527f24d03bafb7d40b31c98e0a6f931bed34c4933c5f7153b8034cb2 ncbi-tools-sdk-doc.tar.bz2 263568
diff --git a/sci-biology/ncbi-tools/files/ncbi-tools-asn2all.patch b/sci-biology/ncbi-tools/files/ncbi-tools-asn2all.patch
new file mode 100644
index 0000000..1cd7976
--- /dev/null
+++ b/sci-biology/ncbi-tools/files/ncbi-tools-asn2all.patch
@@ -0,0 +1,27 @@
+--- ncbi-20050605/make/makedis.csh	2005-05-13 05:42:12.000000000 +0200
++++ ncbi/make/makedis.csh	2005-09-20 22:02:38.000000000 +0200
+@@ -472,6 +472,24 @@
+ 
+ set net_stat = $status
+ 
++if ("$?NCBI_MT_OTHERLIBS" == "1") then
++	set CMD='make $MFLG -f makenet.unx \
++		CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \
++		LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \
++		AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \
++		THREAD_OBJ=$NCBI_THREAD_OBJ \
++		THREAD_OTHERLIBS=\"$NCBI_MT_OTHERLIBS\" \
++		NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB asn2all'
++else
++	set CMD='make $MFLG -f makenet.unx \
++		CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \
++		LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \
++		AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \
++		NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB asn2all'
++endif
++eval echo $CMD
++eval echo $CMD | sh 
++
+ if ($make_stat != 0 || $demo_stat != 0 || $threaded_demo_stat != 0 || $net_stat != 0) then
+    echo FAILURE primary make status = $make_stat, demo = $demo_stat, threaded_demo = $threaded_demo_stat, net = $net_stat
+ 	cat <<EOF
diff --git a/sci-biology/ncbi-tools/files/ncbi-tools-extra_vib.patch b/sci-biology/ncbi-tools/files/ncbi-tools-extra_vib.patch
new file mode 100644
index 0000000..cb7d1ad
--- /dev/null
+++ b/sci-biology/ncbi-tools/files/ncbi-tools-extra_vib.patch
@@ -0,0 +1,37 @@
+--- ncbi-20061015/make/makedis.csh	2006-09-14 17:37:03.000000000 +0200
++++ ncbi/make/makedis.csh	2007-03-07 21:00:36.090836460 +0100
+@@ -485,6 +485,34 @@
+ 
+ set net_stat = $status
+ 
++if ( $net_stat == 0 ) then
++	# Compile additional tools, usually hidden
++	if ( ! $?EXTRA_VIB ) then
++		set EXTRA_VIB = ( asn2all )
++	endif
++	
++	if ("$?NCBI_MT_OTHERLIBS" == "1") then
++		set CMD='make $MFLG -f makenet.unx \
++			CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \
++			LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \
++			AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \
++			THREAD_OBJ=$NCBI_THREAD_OBJ \
++			THREAD_OTHERLIBS=\"$NCBI_MT_OTHERLIBS\" \
++			NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB $EXTRA_VIB'
++	else
++		set CMD='make $MFLG -f makenet.unx \
++			CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \
++			LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \
++			AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \
++			NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB $EXTRA_VIB'
++	endif
++	eval echo $CMD
++	eval echo $CMD | sh
++	
++	set net_stat = $status
++	
++endif
++
+ if ($make_stat != 0 || $demo_stat != 0 || $threaded_demo_stat != 0 || $net_stat != 0) then
+    echo FAILURE primary make status = $make_stat, demo = $demo_stat, threaded_demo = $threaded_demo_stat, net = $net_stat
+ 	cat <<EOF
diff --git a/sci-biology/ncbi-tools/files/ncbi-tools-lop.patch b/sci-biology/ncbi-tools/files/ncbi-tools-lop.patch
new file mode 100644
index 0000000..867b203
--- /dev/null
+++ b/sci-biology/ncbi-tools/files/ncbi-tools-lop.patch
@@ -0,0 +1,15 @@
+--- platform/linux-power.ncbi.mk.bak	2005-08-04 22:45:13.000000000 -0500
++++ platform/linux-power.ncbi.mk	2005-08-04 22:45:35.000000000 -0500
+@@ -9,10 +9,10 @@
+ #it appears the flags above do not work anymore with newer libc,
+ #the new flags should work. Dima. 08/23/01
+ NCBI_AR=ar
+-NCBI_CC = xlc_r -w -qcpluscmt -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
++NCBI_CC = gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
+ NCBI_CFLAGS1 = -c 
+ NCBI_LDFLAGS1 = -O3 -D_LARGE_FILES 
+-NCBI_OPTFLAG = -O3 -qmaxmem=-1 -D_LARGE_FILE
++NCBI_OPTFLAG = -O3  -D_LARGE_FILE
+ NCBI_BIN_MASTER = /vol/stcfs/rchen/LoP/ncbi/bin
+ NCBI_BIN_COPY = /vol/stcfs/rchen/LoP/ncbi/bin
+ NCBI_INCDIR = /vol/stcfs/rchen/LoP/ncbi/include
diff --git a/sci-biology/ncbi-tools/files/ncbirc b/sci-biology/ncbi-tools/files/ncbirc
new file mode 100644
index 0000000..625dc6a
--- /dev/null
+++ b/sci-biology/ncbi-tools/files/ncbirc
@@ -0,0 +1,2 @@
+[NCBI]
+Data=/usr/share/ncbi/data
diff --git a/sci-biology/ncbi-tools/metadata.xml b/sci-biology/ncbi-tools/metadata.xml
new file mode 100644
index 0000000..ebbff81
--- /dev/null
+++ b/sci-biology/ncbi-tools/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-biology/ncbi-tools/ncbi-tools-20070826.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20070826.ebuild
new file mode 100644
index 0000000..e60875c
--- /dev/null
+++ b/sci-biology/ncbi-tools/ncbi-tools-20070826.ebuild
@@ -0,0 +1,200 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+inherit flag-o-matic toolchain-funcs eutils autotools
+
+DESCRIPTION="Development toolkit and applications for computational biology"
+LICENSE="public-domain"
+HOMEPAGE="http://www.ncbi.nlm.nih.gov/"
+SRC_URI="mirror://gentoo/${P}.tar.gz
+	doc? ( mirror://gentoo/${PN}-sdk-doc.tar.bz2 )
+	mpi? ( mirror://gentoo/mpiblast-20060625.tar.gz )"
+
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~ppc ~ppc64 ~sparc ~x86"
+IUSE="doc mpi X"
+
+DEPEND="app-shells/tcsh
+	dev-lang/perl
+	media-libs/libpng
+	sys-devel/pmake
+	mpi? ( virtual/mpi )
+	X? ( virtual/motif )"
+
+S="${WORKDIR}/ncbi"
+
+EXTRA_VIB="asn2all asn2asn"
+
+pkg_setup() {
+	echo
+	ewarn 'Please note that the NCBI toolkit (and especially the X'
+	ewarn 'applications) are known to have compilation and run-time'
+	ewarn 'problems when compiled with agressive compilation flags. The'
+	ewarn '"-O3" flag is filtered by the ebuild on the x86 architecture if'
+	ewarn 'X support is enabled.'
+	echo
+}
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+
+	epatch "${FILESDIR}"/${PN}-extra_vib.patch
+
+	if use ppc64; then
+		epatch "${FILESDIR}"/${PN}-lop.patch
+	fi
+
+	if use mpi; then
+		cd "${WORKDIR}"
+		epatch "${WORKDIR}"/mpiblast/ncbi_Dec2005_evalue.patch
+	fi
+
+	if ! use X; then
+		cd "${S}"/make
+		sed -e "s:\#set HAVE_OGL=0:set HAVE_OGL=0:" \
+			-e "s:\#set HAVE_MOTIF=0:set HAVE_MOTIF=0:" \
+			-i makedis.csh || die
+	else
+		if use x86; then
+			# X applications segfault on startup on x86 with -O3.
+			replace-flags '-O3' '-O2'
+		fi
+	fi
+
+	# Apply user C flags...
+	cd "${S}"/platform
+	# ... on x86...
+	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
+		-e "s/NCBI_LDFLAGS1 = -O3 -mcpu=pentium4/NCBI_LDFLAGS1 = ${CFLAGS}/" \
+		-e "s/NCBI_OPTFLAG = -O3 -mcpu=pentium4/NCBI_OPTFLAG = ${CFLAGS}/" \
+		-i linux-x86.ncbi.mk || die
+	# ... on alpha...
+	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
+		-e "s/NCBI_LDFLAGS1 = -O3 -mieee/NCBI_LDFLAGS1 = -mieee ${CFLAGS}/" \
+		-e "s/NCBI_OPTFLAG = -O3 -mieee/NCBI_OPTFLAG = -mieee ${CFLAGS}/" \
+		-i linux-alpha.ncbi.mk || die
+	# ... on hppa...
+	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
+		-e "s/NCBI_LDFLAGS1 = -O2/NCBI_LDFLAGS1 = ${CFLAGS}/" \
+		-e "s/NCBI_OPTFLAG = -O2/NCBI_OPTFLAG = ${CFLAGS}/" \
+		-i hppalinux.ncbi.mk || die
+	# ... on ppc...
+	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
+		-e "s/NCBI_LDFLAGS1 = -O2/NCBI_LDFLAGS1 = ${CFLAGS}/" \
+		-e "s/NCBI_OPTFLAG = -O2/NCBI_OPTFLAG = ${CFLAGS}/" \
+		-i ppclinux.ncbi.mk || die
+	# ... on generic Linux.
+	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
+		-e "s/NCBI_LDFLAGS1 = -O3/NCBI_LDFLAGS1 = ${CFLAGS}/" \
+		-e "s/NCBI_OPTFLAG = -O3/NCBI_OPTFLAG = ${CFLAGS}/" \
+		-i linux.ncbi.mk || die
+
+	# Put in our MAKEOPTS (doesn't work).
+	# sed -e "s:make \$MFLG:make ${MAKEOPTS}:" -i ncbi/make/makedis.csh
+
+	# Set C compiler...
+	# ... on x86...
+	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" linux-x86.ncbi.mk || die
+	# ... on alpha...
+	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" linux-alpha.ncbi.mk || die
+	# ... on hppa...
+	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" hppalinux.ncbi.mk || die
+	# ... on ppc...
+	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" ppclinux.ncbi.mk || die
+	# ... on generic Linux.
+	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" linux.ncbi.mk || die
+
+	# GNU make 3.81 is confused by those nightmarish Makefiles, so we use pmake
+	# instead. The right solution would be to fix the Makefiles. (Be my guest.)
+	cd "${S}"/make
+	sed -i -e "s%CMD='make%CMD='/usr/bin/pmake%" makedis.csh || die \
+			"Failed to replace make by pmake."
+}
+
+src_compile() {
+	export EXTRA_VIB
+	cd "${WORKDIR}"
+	ncbi/make/makedis.csh || die
+	mkdir "${S}"/cgi
+	mkdir "${S}"/real
+	mv "${S}"/bin/*.cgi "${S}"/cgi || die
+	mv "${S}"/bin/*.REAL "${S}"/real || die
+
+	if use mpi; then
+		cd "${WORKDIR}"/mpiblast
+		AM_OPT="-a"
+		eautoreconf
+		econf --with-ncbi="${WORKDIR}"/ncbi --with-mpi=/usr || die
+		emake || die
+	fi
+}
+
+src_install() {
+	dobin "${S}"/bin/* || die "Failed to install binaries."
+	for i in ${EXTRA_VIB}; do
+		dobin "${S}"/build/${i} || die "Failed to install binaries."
+	done
+	dolib "${S}"/lib/* || die "Failed to install libraries."
+	mkdir -p "${D}"/usr/include/ncbi
+	cp -RL "${S}"/include/* "${D}"/usr/include/ncbi || \
+		die "Failed to install headers."
+
+	if use mpi; then
+		cd "${WORKDIR}"/mpiblast
+		make install DESTDIR="${D}" || die "Failed to install MPI blast."
+	fi
+
+	# TODO: Web apps
+	#insinto /usr/share/ncbi/lib/cgi
+	#doins ${S}/cgi/*
+	#insinto /usr/share/ncbi/lib/real
+	#doins ${S}/real/*
+	# TODO: Add support for wwwblast.
+
+	# Basic documentation
+	dodoc "${S}"/{README,VERSION,doc/{*.txt,README.asn2xml}} || \
+		die "Failed to install basic documentation."
+	newdoc "${S}"/doc/fa2htgs/README README.fa2htgs || \
+		die "Failed renaming fa2htgs documentation."
+	newdoc "${S}"/config/README README.config || \
+		die "Failed renaming config documentation."
+	newdoc "${S}"/network/encrypt/README README.encrypt || \
+		die "Failed renaming encrypt documentation."
+	newdoc "${S}"/network/nsclilib/readme README.nsclilib || \
+	die "Failed renaming nsclilib documentation."
+	newdoc "${S}"/sequin/README README.sequin || \
+		die "Failed renaming sequin documentation."
+	doman "${S}"/doc/man/* || \
+		die "Failed to install man pages."
+
+	# Hypertext user documentation
+	dohtml "${S}"/{README.htm,doc/{*.html,*.gif}} || \
+		die "Failed to install HTML documentation."
+	insinto /usr/share/doc/${PF}/html/blast
+	doins "${S}"/doc/blast/* || die "Failed to install blast HTML documentation."
+
+	# Developer documentation
+	if use doc; then
+		# Hypertext SDK documentation
+		insinto /usr/share/doc/${PF}/html/sdk
+		doins "${WORKDIR}"/${PN}-sdk-doc/* || die
+
+		# Demo programs
+		mkdir "${D}"/usr/share/ncbi
+		mv "${S}"/demo "${D}"/usr/share/ncbi/demo || die
+	fi
+
+	# Shared data (similarity matrices and such) and database directory.
+	insinto /usr/share/ncbi/data
+	doins "${S}"/data/* || die "Failed to install shared data."
+	dodir /usr/share/ncbi/formatdb || die
+
+	# Default config file to set the path for shared data.
+	insinto /etc/ncbi
+	newins "${FILESDIR}"/ncbirc .ncbirc || die "Failed to install config file."
+
+	# Env file to set the location of the config file and BLAST databases.
+	newenvd "${FILESDIR}"/21ncbi-r1 21ncbi || die "Failed to install env file."
+}