diff options
author | 2009-02-13 20:51:06 +0100 | |
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committer | 2009-02-13 20:51:06 +0100 | |
commit | b7604272d3545f788e69055dca196cb304d7ea1d (patch) | |
tree | d2b2a3044ef3b92b76387d47994e78471b785759 | |
parent | sci-chemistry/ccpn version bump to 2.0.6.1 (diff) | |
parent | Add patch for gcc 4.3 (diff) | |
download | sci-b7604272d3545f788e69055dca196cb304d7ea1d.tar.gz sci-b7604272d3545f788e69055dca196cb304d7ea1d.tar.bz2 sci-b7604272d3545f788e69055dca196cb304d7ea1d.zip |
Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
-rw-r--r-- | licenses/MolSoft | 20 | ||||
-rw-r--r-- | sci-chemistry/icm/ChangeLog | 10 | ||||
-rw-r--r-- | sci-chemistry/icm/Manifest | 15 | ||||
-rw-r--r-- | sci-chemistry/icm/files/90icm | 3 | ||||
-rw-r--r-- | sci-chemistry/icm/icm-3.6.1d.ebuild | 57 | ||||
-rw-r--r-- | sci-chemistry/icm/metadata.xml | 9 | ||||
-rw-r--r-- | sci-chemistry/wxmacmolplt/ChangeLog | 14 | ||||
-rw-r--r-- | sci-chemistry/wxmacmolplt/Manifest | 16 | ||||
-rw-r--r-- | sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-gcc43.patch | 9 | ||||
-rw-r--r-- | sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-ming.patch | 11 | ||||
-rw-r--r-- | sci-chemistry/wxmacmolplt/metadata.xml | 8 | ||||
-rw-r--r-- | sci-chemistry/wxmacmolplt/wxmacmolplt-7.2.1.ebuild | 39 | ||||
-rw-r--r-- | sys-cluster/mpich2/Manifest | 15 |
13 files changed, 224 insertions, 2 deletions
diff --git a/licenses/MolSoft b/licenses/MolSoft new file mode 100644 index 000000000..3c2052be4 --- /dev/null +++ b/licenses/MolSoft @@ -0,0 +1,20 @@ +Molsoft, L.L.C. has made every effort to supply trademark and copyright information about mentioned individuals, +company names, services and products. All products or services not listed below are the trademarks, registered +trademarks, service marks, or registered service marks of their respective owners. + + * CSD is copyrighted by Cambridge Crystallographic Data Centre. + * DEC is a registered trademark of Digital Equipment Corp. + * GhostScript (gs) is a trademark of Aladdin Enterprises. + * IRIX is registered by Silicon Graphics, Inc. + * IRIS is a trademark of Silicon Graphics, Inc. + * Java and Java -based marks are trademarks or registered trademarks of Sun Microsystems, Inc in the United States +and other countries. + * Netscape is a trademark of Netscape Communication Corp. + * PostScript is a registered trademark of Adobe Systems, Inc. + * Prosite is copyrighted by Amos Bairoch, Medical Biochemistry Department, University of Geneva, Switzerland + * SD-file and mol -file formats are copyrighted by Molecular Design Limited (MDL Information Systems, Inc.). + * Sybyl and mol2 -file format are copyrighted by Tripos, Inc. + * TIFF is a trademark of the Aldus Corp. + * UNIX is a registered trademark of UNIX System Laboratories, Inc. + * Wavefront is a trademark of Wavefront Technologies, Inc. + * Windows 95 and Windows NT are trademarks or registered trademarks of Microsoft Corporation. diff --git a/sci-chemistry/icm/ChangeLog b/sci-chemistry/icm/ChangeLog new file mode 100644 index 000000000..fe61691db --- /dev/null +++ b/sci-chemistry/icm/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-chemistry/icm +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*icm-3.6.1d (13 Feb 2009) + + 13 Feb 2009; Alexey Shvetsov <alexxy@gentoo.org> +files/90icm, + +metadata.xml, +icm-3.6.1d.ebuild: + Add ICM-pro initialy + diff --git a/sci-chemistry/icm/Manifest b/sci-chemistry/icm/Manifest new file mode 100644 index 000000000..bf764cac1 --- /dev/null +++ b/sci-chemistry/icm/Manifest @@ -0,0 +1,15 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +AUX 90icm 84 RMD160 e994059f717008f62d35dcbe3a4dca5571e38b4c SHA1 019ae240f76734dae6fdcbd7f332e37ecdf89f11 SHA256 b08d5769a93a74350173395cc206426b9c373f32d2211852c83bc0d1d9554403 +DIST icm-3.6-1d.i386.rpm 103434638 RMD160 eb7c305e6355430fffb9f367bfbee6995d1915cf SHA1 e70ac43f056ceffd673af7386df2708d31dd9484 SHA256 832a7b31f18ed772c1320e143dac7a1d1f9ab080227a42a1dcb09ae355967855 +EBUILD icm-3.6.1d.ebuild 1234 RMD160 05c4158a87b68f0f77c300aaf618aa59d83447e8 SHA1 c3e8eaa6b92ae722f8e41105a583f02f38caa251 SHA256 e215e21100445afd796593e73bc3d5feda68bb47510893fb46a740baa393cfc1 +MISC ChangeLog 271 RMD160 33e76a009df2ea73d33de7c223a371c780a03dfd SHA1 da5a8b7b6464d7fddc85dd782989af66bb62647f SHA256 015bf23408fbe050b3a3c1baba3f7e78b6a1d55ac5862cf8dc4a61214e10acf2 +MISC metadata.xml 257 RMD160 a36571e1f0e18fb7a18b73d5fb37d9bd0861fb49 SHA1 a0ddeb1a8d81d113bfc8a4cf1cd0717f847fd758 SHA256 344d9ca6a57b35b97682e144d205204c0b7da04a53ea67c7b3c89b8c8c8b5e5f +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.9 (GNU/Linux) + +iEYEARECAAYFAkmVT+MACgkQ5BmOA85PVLiorgCfZGLfYHyEsKFyXkXF4eYeVRAz +TzYAn2B5rnXBEh40xgEZ7bUPx4YjJSRP +=Jlv0 +-----END PGP SIGNATURE----- diff --git a/sci-chemistry/icm/files/90icm b/sci-chemistry/icm/files/90icm new file mode 100644 index 000000000..ce8966c40 --- /dev/null +++ b/sci-chemistry/icm/files/90icm @@ -0,0 +1,3 @@ +ICMHOME=/opt/icm +LM_LICENSE_FILE=/opt/icm/licenses/license.dat +MANPATH=/opt/icm/man diff --git a/sci-chemistry/icm/icm-3.6.1d.ebuild b/sci-chemistry/icm/icm-3.6.1d.ebuild new file mode 100644 index 000000000..68b14b2e5 --- /dev/null +++ b/sci-chemistry/icm/icm-3.6.1d.ebuild @@ -0,0 +1,57 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +inherit rpm eutils versionator + +MY_PV=$(replace_version_separator 2 '-' ) +MY_P="$PN-${MY_PV}" +DESCRIPTION="MolSoft LCC ICM Pro" +SRC_URI="${MY_P}.i386.rpm" +HOMEPAGE="http://molsoft.com" +LICENSE="MolSoft" + +SLOT=0 +DEPEND="x11-drivers/nvidia-drivers" +RDEPEND=">=sys-libs/glibc-2.2.5 + virtual/libstdc++" +KEYWORDS="~amd64 ~x86" +IUSE="" +RESTRICT="fetch" +S="${WORKDIR}/usr/${MY_P}" + +pkg_nofetch() { + einfo "Please download ${SRC_URI} from " + einfo "${HOMEPAGE}" + einfo "and move it to ${DISTDIR}" +} + +src_unpack() { + rpm_src_unpack + cd "${S}" || die +} + +src_install () { + instdir=/opt/icm + dodir "${instdir}" + dodir "${instdir}/licenses" + cp -pPR * "${D}/${instdir}" + doenvd "${FILESDIR}/90icm" || die + exeinto ${instdir} + doexe "${S}/icm" || die + doexe "${S}/lmhostid" || die + doexe "${S}/txdoc" || die + dosym "${instdir}/icm" /opt/bin/icm || die + dosym "${instdir}/txdoc" /opt/bin/txdoc || die + dosym "${instdir}/lmhostid" /opt/bin/lmhostid || die +} + +pkg_postinst () { + einfo + einfo "Documentation can be found in ${instdir}/man/" + einfo + einfo "You will need to place your license in ${instdir}/licenses/" + einfo + +} + diff --git a/sci-chemistry/icm/metadata.xml b/sci-chemistry/icm/metadata.xml new file mode 100644 index 000000000..3cfdd8f68 --- /dev/null +++ b/sci-chemistry/icm/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-chemistry</herd> +<maintainer> + <email>alexxy@gentoo.org</email> + <name>Alexey Shvetsov</name> +</maintainer> +</pkgmetadata> diff --git a/sci-chemistry/wxmacmolplt/ChangeLog b/sci-chemistry/wxmacmolplt/ChangeLog new file mode 100644 index 000000000..80932620b --- /dev/null +++ b/sci-chemistry/wxmacmolplt/ChangeLog @@ -0,0 +1,14 @@ +# ChangeLog for sci-chemistry/wxmacmolplt +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 13 Feb 2009; Alexey Shvetsov <alexxy@gentoo.org> + +files/wxmacmolplt-7.2.1-gcc43.patch, wxmacmolplt-7.2.1.ebuild: + Add patch for gcc 4.3 + +*wxmacmolplt-7.2.1 (13 Feb 2009) + + 13 Feb 2009; Alexey Shvetsov <alexxy@gentoo.org> + +files/wxmacmolplt-7.2.1-ming.patch, +wxmacmolplt-7.2.1.ebuild: + Add wxmacmolplt initialy bug #197131 + diff --git a/sci-chemistry/wxmacmolplt/Manifest b/sci-chemistry/wxmacmolplt/Manifest new file mode 100644 index 000000000..85643a3be --- /dev/null +++ b/sci-chemistry/wxmacmolplt/Manifest @@ -0,0 +1,16 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +AUX wxmacmolplt-7.2.1-gcc43.patch 286 RMD160 89024e9ab6a06ab66f9248c8c9c9f88f8678585c SHA1 fa396b662f58c6ccc784b38f1f0909b46de549b1 SHA256 f3faa0616d02be3590d52dc95fdff55a9343dfde7df74c785689bdcafd51880c +AUX wxmacmolplt-7.2.1-ming.patch 402 RMD160 44e8644cf7f28549fd24432979e1982753f31e92 SHA1 bb838d234cd3e6af66b9acd43b3a46b30450bb65 SHA256 159d6ade9ec84f1247d92f4cfd8f7a28d73651bf8d0e42ff2d181b3a7af6f999 +DIST wxmacmolplt-7.2.1.tar.gz 1617541 RMD160 7da381f33578d2b578efa937691b4ca8b461eb8b SHA1 45d3f43f33bf334ac6b6d7b187c271d8fd6ef32b SHA256 1e079a05da1738118164488722246377744ad3a6d1def5fb5965eed803bf69d4 +EBUILD wxmacmolplt-7.2.1.ebuild 851 RMD160 4cc43a64a1ef5199bc402e886adf7e6895be0782 SHA1 bebf6fafd66b6d21d2201a19a3059d1783a8c365 SHA256 ec2c522f2e05f7521d3a81c3d0bae91acee12517395f060fd0bc0ead2b002d10 +MISC ChangeLog 459 RMD160 91258f33a5b38476a4b2eff3cb63b1128dfeb653 SHA1 bc3643768d4de651693d1a47a1a5eb388001fe2e SHA256 83c12ce78e776be485bb61df917dc2b3b79b45930d9c4de7f62d49204fb666e7 +MISC metadata.xml 245 RMD160 18596976a5c01cb139ec864df9c3e5af31bb7e84 SHA1 11a9e38cb22a455bfa7164418b209da0d1abedf6 SHA256 643385b3a789b424bcc6dc46fe5dc1607071820f9fd35fe91de2e7984f97cdfd +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.9 (GNU/Linux) + +iEYEARECAAYFAkmVVdQACgkQ5BmOA85PVLjG2wCcCEK+XqsA1786CHMHQwT/qDpM +AAQAoJ2DOgtFw1UuGfPkIGAqzyY0x1z2 +=tdbQ +-----END PGP SIGNATURE----- diff --git a/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-gcc43.patch b/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-gcc43.patch new file mode 100644 index 000000000..c98204f9b --- /dev/null +++ b/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-gcc43.patch @@ -0,0 +1,9 @@ +--- wxmacmolplt-7.2.1/src/Geometries.cpp.orig 2009-02-13 14:06:06.000000000 +0300 ++++ wxmacmolplt-7.2.1/src/Geometries.cpp 2009-02-13 14:06:54.000000000 +0300 +@@ -1,5 +1,6 @@ + #include <iomanip> + #include <iostream> ++#include <stdlib.h> + + #include "Geometries.h" + #include "Globals.h" diff --git a/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-ming.patch b/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-ming.patch new file mode 100644 index 000000000..e633f5288 --- /dev/null +++ b/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-ming.patch @@ -0,0 +1,11 @@ +--- configure.ac.orig 2008-05-13 19:27:34.000000000 +0300 ++++ configure.ac 2008-11-14 21:41:44.000000000 +0200 +@@ -39,7 +39,7 @@ + [AC_SUBST([LIBMING], ["-lming"]) AC_DEFINE([HAVE_LIBMING])], + [if test "x$with_ming" != xyes; then + AC_MSG_FAILURE([--with-ming was given, but test for ming failed]) +- fi], -lpng)]) ++ fi], -lpng -lgif)]) + + WXCONFIG=wx-config + AC_ARG_WITH(wx-config, diff --git a/sci-chemistry/wxmacmolplt/metadata.xml b/sci-chemistry/wxmacmolplt/metadata.xml new file mode 100644 index 000000000..1aea1ef06 --- /dev/null +++ b/sci-chemistry/wxmacmolplt/metadata.xml @@ -0,0 +1,8 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-chemistry</herd> +<use> + <flag name='ming'>Add support for flash movie generation</flag> +</use> +</pkgmetadata> diff --git a/sci-chemistry/wxmacmolplt/wxmacmolplt-7.2.1.ebuild b/sci-chemistry/wxmacmolplt/wxmacmolplt-7.2.1.ebuild new file mode 100644 index 000000000..78e09e16a --- /dev/null +++ b/sci-chemistry/wxmacmolplt/wxmacmolplt-7.2.1.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +inherit eutils + +DESCRIPTION="Chemical 3D graphics program with GAMESS input builder" +HOMEPAGE="http://www.scl.ameslab.gov/~brett/MacMolPlt/" + +SRC_URI="http://www.scl.ameslab.gov/~brett/MacMolPlt/download/${P}.tar.gz" +LICENSE="GPL-2" + +KEYWORDS="~amd64 ~x86" +SLOT="0" + +IUSE="ming" + +RDEPEND="x11-libs/wxGTK + ming? ( media-libs/ming )" + +DEPEND="${RDEPEND}" + +src_unpack() { + unpack ${A} + cd "${S}" + epatch "${FILESDIR}/${P}-ming.patch" + epatch "${FILESDIR}/${P}-gcc43.patch" +} + +src_compile() { + econf $(use_with ming) || die "configure failed" + emake || die "make failed" +} + +src_install() { + emake DESTDIR="${D}" install || die "install failed" + doicon resources/${PN}.png + make_desktop_entry ${PN} wxMacMolPlt ${PN}.png Education +} diff --git a/sys-cluster/mpich2/Manifest b/sys-cluster/mpich2/Manifest index b370b944e..c355ba69d 100644 --- a/sys-cluster/mpich2/Manifest +++ b/sys-cluster/mpich2/Manifest @@ -1,10 +1,21 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + AUX eselect.mpi.mpich2 226 RMD160 62e00e1f67ff5cc088d7aa3ef082241afef33bde SHA1 f89ddfb1a10251f5023093f6577ebb8265d55627 SHA256 ffad3f539f008c597077aee91a7c635968311c8b3124619acb727facd0d1e99e AUX mpd.conf 48 RMD160 289de9bb40759e3f71229cf47e4d2af83703a85f SHA1 244eee76dbf4ff269e4489d5cc7c3577c6c1fa6b SHA256 ae740cacaf2cb798921cb2092f5af98de67445e27af3f88858f3e6d2bbb127f4 AUX mpich2-1.0.8-gforker-install-alt-fix.patch 621 RMD160 5b9904ae02f1c1098fdfd2dc4717610f89469afd SHA1 a33bcefa87d990a678436ebfac70976069a7f90d SHA256 a79e469b08e0a3f6c17ec7ec7ea01d3a56a553803fefd24f3794237eead36ced AUX mpich2-1.0.8-mpdconf-env.patch 5041 RMD160 c3d9f6ebd43443a24614da030253cf8c503afd59 SHA1 5b453a171f8b1dce93e3c2e675e5b3d4f05514e8 SHA256 b8c81614bba8c748db2ec24a7683d27b3a0430950fecd5644fd1f97f8e5ab2f9 +AUX mpich2-1.0.8-pkgconfig.patch 928 RMD160 5ce7a800423f250dba0dd69560abebf845e7e556 SHA1 afba6883d1204a4b7c082af7e976186153263d64 SHA256 7f8dcafcb0d138130a684284d9bca86e4834f74a5132f0fef4556391abf43f8e AUX mpich2-1.0.8-site-packages-py.patch 7534 RMD160 93b2cab20620da379615eaf3bfc7279384987722 SHA1 706313c20e1d4d6a4a060c8ac36befdb5ee3b926 SHA256 a857e7c0effa7cdd62c1bc1bd054b4746764246410062d373e7e0892bcd20df8 AUX mpich2.envd 45 RMD160 e29a0d617bbc15cc42d3088f8a79c1c715b353fa SHA1 765b885d0e1d65fe7ba845cf72e3e923613d6514 SHA256 d6f128f84e1d015922af42e1280586b84737740b2517cc0b35f498b571f252f9 DIST mpich2-1.0.8.tar.gz 17237476 RMD160 646cf50fbdc60a49809f4d0a6bcaf2835844db1f SHA1 41d6f6ce1034ecec5c14fb03592730ae2dd071e5 SHA256 7551ce20f3ef366567c566d08782323360b5dbd2d15d816e41c10b5f96eaf369 -EBUILD mpich2-1.0.8.ebuild 5772 RMD160 484f6d95da65bfd71fa836fe16ebaf4624f8c0a8 SHA1 af3e3ebc591ee939b59d79715853d274a7c38b06 SHA256 5d4b169c491c3362e026928b95514aa43dcc3dede201a2169fcb4b6246c6c519 -MISC ChangeLog 333 RMD160 c04eb3fecf6e33167b02011a9d0a751a7ca8c0f0 SHA1 ca2856d555418df1a17320926653b8e5ee50aa6d SHA256 b852325d09d1dde584d1c6ab6b72c3db3801a0cbd43e0f25fcb923f6ca988ce3 +EBUILD mpich2-1.0.8.ebuild 5948 RMD160 885d12edafe1c92f92fc9b66bfdda28321fb884f SHA1 1f9ec9ff94803d27c3641670f7a3500e5fa602d0 SHA256 6da5a9383cdae968a741752d0018ef8b422cf740c123ec412b8003a79120c497 +MISC ChangeLog 711 RMD160 d9d51438c4514d4812653b49ada1c9b99ce7c840 SHA1 d20de4cf497201863154a3f3063b35eb727d0ac2 SHA256 b66a8ece07c1f114b2186552b4370cd360c48160c7743324633a0a9947b997db MISC metadata.xml 468 RMD160 98d955b7fd33a5b54c618424df4bc1237bb91a21 SHA1 eb055936e1a4ecafa846c1b7be6bc8c96d503ba1 SHA256 9516aa2c4536c5bc0555b42af1019a82e0f027ba8e52c0c46bcb5ee3fff8a765 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.9 (GNU/Linux) + +iEYEARECAAYFAkmVSfIACgkQ5BmOA85PVLjYsgCbBALSp/y6FmerIScMPe+F44+S +ENQAniLSc6uXxEb/scBVm1wiQheZVlLv +=Ql2V +-----END PGP SIGNATURE----- |