13 files changed, 224 insertions, 2 deletions
diff --git a/licenses/MolSoft b/licenses/MolSoft
new file mode 100644
index 000000000..3c2052be4
--- /dev/null
+++ b/licenses/MolSoft
@@ -0,0 +1,20 @@
+Molsoft, L.L.C. has made every effort to supply trademark and copyright information about mentioned individuals, 
+company names, services and products. All products or services not listed below are the trademarks, registered 
+trademarks, service marks, or registered service marks of their respective owners.
+
+    * CSD is copyrighted by Cambridge Crystallographic Data Centre.
+    * DEC is a registered trademark of Digital Equipment Corp.
+    * GhostScript (gs) is a trademark of Aladdin Enterprises.
+    * IRIX is registered by Silicon Graphics, Inc.
+    * IRIS is a trademark of Silicon Graphics, Inc.
+    * Java and Java -based marks are trademarks or registered trademarks of Sun Microsystems, Inc in the United States 
+and other countries.
+    * Netscape is a trademark of Netscape Communication Corp.
+    * PostScript is a registered trademark of Adobe Systems, Inc.
+    * Prosite is copyrighted by Amos Bairoch, Medical Biochemistry Department, University of Geneva, Switzerland
+    * SD-file and mol -file formats are copyrighted by Molecular Design Limited (MDL Information Systems, Inc.).
+    * Sybyl and mol2 -file format are copyrighted by Tripos, Inc.
+    * TIFF is a trademark of the Aldus Corp.
+    * UNIX is a registered trademark of UNIX System Laboratories, Inc.
+    * Wavefront is a trademark of Wavefront Technologies, Inc.
+    * Windows 95 and Windows NT are trademarks or registered trademarks of Microsoft Corporation. 
diff --git a/sci-chemistry/icm/ChangeLog b/sci-chemistry/icm/ChangeLog
new file mode 100644
index 000000000..fe61691db
--- /dev/null
+++ b/sci-chemistry/icm/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/icm
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*icm-3.6.1d (13 Feb 2009)
+
+  13 Feb 2009; Alexey Shvetsov <alexxy@gentoo.org> +files/90icm,
+  +metadata.xml, +icm-3.6.1d.ebuild:
+  Add ICM-pro initialy
+
diff --git a/sci-chemistry/icm/Manifest b/sci-chemistry/icm/Manifest
new file mode 100644
index 000000000..bf764cac1
--- /dev/null
+++ b/sci-chemistry/icm/Manifest
@@ -0,0 +1,15 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+AUX 90icm 84 RMD160 e994059f717008f62d35dcbe3a4dca5571e38b4c SHA1 019ae240f76734dae6fdcbd7f332e37ecdf89f11 SHA256 b08d5769a93a74350173395cc206426b9c373f32d2211852c83bc0d1d9554403
+DIST icm-3.6-1d.i386.rpm 103434638 RMD160 eb7c305e6355430fffb9f367bfbee6995d1915cf SHA1 e70ac43f056ceffd673af7386df2708d31dd9484 SHA256 832a7b31f18ed772c1320e143dac7a1d1f9ab080227a42a1dcb09ae355967855
+EBUILD icm-3.6.1d.ebuild 1234 RMD160 05c4158a87b68f0f77c300aaf618aa59d83447e8 SHA1 c3e8eaa6b92ae722f8e41105a583f02f38caa251 SHA256 e215e21100445afd796593e73bc3d5feda68bb47510893fb46a740baa393cfc1
+MISC ChangeLog 271 RMD160 33e76a009df2ea73d33de7c223a371c780a03dfd SHA1 da5a8b7b6464d7fddc85dd782989af66bb62647f SHA256 015bf23408fbe050b3a3c1baba3f7e78b6a1d55ac5862cf8dc4a61214e10acf2
+MISC metadata.xml 257 RMD160 a36571e1f0e18fb7a18b73d5fb37d9bd0861fb49 SHA1 a0ddeb1a8d81d113bfc8a4cf1cd0717f847fd758 SHA256 344d9ca6a57b35b97682e144d205204c0b7da04a53ea67c7b3c89b8c8c8b5e5f
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.9 (GNU/Linux)
+
+iEYEARECAAYFAkmVT+MACgkQ5BmOA85PVLiorgCfZGLfYHyEsKFyXkXF4eYeVRAz
+TzYAn2B5rnXBEh40xgEZ7bUPx4YjJSRP
+=Jlv0
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/icm/files/90icm b/sci-chemistry/icm/files/90icm
new file mode 100644
index 000000000..ce8966c40
--- /dev/null
+++ b/sci-chemistry/icm/files/90icm
@@ -0,0 +1,3 @@
+ICMHOME=/opt/icm
+LM_LICENSE_FILE=/opt/icm/licenses/license.dat
+MANPATH=/opt/icm/man
diff --git a/sci-chemistry/icm/icm-3.6.1d.ebuild b/sci-chemistry/icm/icm-3.6.1d.ebuild
new file mode 100644
index 000000000..68b14b2e5
--- /dev/null
+++ b/sci-chemistry/icm/icm-3.6.1d.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+inherit rpm eutils versionator
+
+MY_PV=$(replace_version_separator 2 '-' )
+MY_P="$PN-${MY_PV}"
+DESCRIPTION="MolSoft LCC ICM Pro"
+SRC_URI="${MY_P}.i386.rpm"
+HOMEPAGE="http://molsoft.com"
+LICENSE="MolSoft"
+
+SLOT=0
+DEPEND="x11-drivers/nvidia-drivers"
+RDEPEND=">=sys-libs/glibc-2.2.5
+	virtual/libstdc++"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+RESTRICT="fetch"
+S="${WORKDIR}/usr/${MY_P}"
+
+pkg_nofetch() {
+	einfo "Please download ${SRC_URI} from "
+	einfo "${HOMEPAGE}"
+	einfo "and move it to ${DISTDIR}"
+}
+
+src_unpack() {
+	rpm_src_unpack
+	cd "${S}" || die
+}
+
+src_install () {
+	instdir=/opt/icm
+	dodir "${instdir}"
+	dodir "${instdir}/licenses"
+	cp -pPR * "${D}/${instdir}"
+	doenvd "${FILESDIR}/90icm" || die
+	exeinto ${instdir}
+	doexe "${S}/icm" || die
+	doexe "${S}/lmhostid" || die
+	doexe "${S}/txdoc" || die
+	dosym "${instdir}/icm"  /opt/bin/icm || die
+	dosym "${instdir}/txdoc"  /opt/bin/txdoc || die
+	dosym "${instdir}/lmhostid"  /opt/bin/lmhostid || die
+}
+
+pkg_postinst () {
+	einfo
+	einfo "Documentation can be found in ${instdir}/man/"
+	einfo
+	einfo "You will need to place your license in ${instdir}/licenses/"
+	einfo
+
+}
+
diff --git a/sci-chemistry/icm/metadata.xml b/sci-chemistry/icm/metadata.xml
new file mode 100644
index 000000000..3cfdd8f68
--- /dev/null
+++ b/sci-chemistry/icm/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-chemistry</herd>
+<maintainer>
+	<email>alexxy@gentoo.org</email>
+	<name>Alexey Shvetsov</name>
+</maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/wxmacmolplt/ChangeLog b/sci-chemistry/wxmacmolplt/ChangeLog
new file mode 100644
index 000000000..80932620b
--- /dev/null
+++ b/sci-chemistry/wxmacmolplt/ChangeLog
@@ -0,0 +1,14 @@
+# ChangeLog for sci-chemistry/wxmacmolplt
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  13 Feb 2009; Alexey Shvetsov <alexxy@gentoo.org>
+  +files/wxmacmolplt-7.2.1-gcc43.patch, wxmacmolplt-7.2.1.ebuild:
+  Add patch for gcc 4.3
+
+*wxmacmolplt-7.2.1 (13 Feb 2009)
+
+  13 Feb 2009; Alexey Shvetsov <alexxy@gentoo.org>
+  +files/wxmacmolplt-7.2.1-ming.patch, +wxmacmolplt-7.2.1.ebuild:
+  Add wxmacmolplt initialy bug #197131
+
diff --git a/sci-chemistry/wxmacmolplt/Manifest b/sci-chemistry/wxmacmolplt/Manifest
new file mode 100644
index 000000000..85643a3be
--- /dev/null
+++ b/sci-chemistry/wxmacmolplt/Manifest
@@ -0,0 +1,16 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+AUX wxmacmolplt-7.2.1-gcc43.patch 286 RMD160 89024e9ab6a06ab66f9248c8c9c9f88f8678585c SHA1 fa396b662f58c6ccc784b38f1f0909b46de549b1 SHA256 f3faa0616d02be3590d52dc95fdff55a9343dfde7df74c785689bdcafd51880c
+AUX wxmacmolplt-7.2.1-ming.patch 402 RMD160 44e8644cf7f28549fd24432979e1982753f31e92 SHA1 bb838d234cd3e6af66b9acd43b3a46b30450bb65 SHA256 159d6ade9ec84f1247d92f4cfd8f7a28d73651bf8d0e42ff2d181b3a7af6f999
+DIST wxmacmolplt-7.2.1.tar.gz 1617541 RMD160 7da381f33578d2b578efa937691b4ca8b461eb8b SHA1 45d3f43f33bf334ac6b6d7b187c271d8fd6ef32b SHA256 1e079a05da1738118164488722246377744ad3a6d1def5fb5965eed803bf69d4
+EBUILD wxmacmolplt-7.2.1.ebuild 851 RMD160 4cc43a64a1ef5199bc402e886adf7e6895be0782 SHA1 bebf6fafd66b6d21d2201a19a3059d1783a8c365 SHA256 ec2c522f2e05f7521d3a81c3d0bae91acee12517395f060fd0bc0ead2b002d10
+MISC ChangeLog 459 RMD160 91258f33a5b38476a4b2eff3cb63b1128dfeb653 SHA1 bc3643768d4de651693d1a47a1a5eb388001fe2e SHA256 83c12ce78e776be485bb61df917dc2b3b79b45930d9c4de7f62d49204fb666e7
+MISC metadata.xml 245 RMD160 18596976a5c01cb139ec864df9c3e5af31bb7e84 SHA1 11a9e38cb22a455bfa7164418b209da0d1abedf6 SHA256 643385b3a789b424bcc6dc46fe5dc1607071820f9fd35fe91de2e7984f97cdfd
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.9 (GNU/Linux)
+
+iEYEARECAAYFAkmVVdQACgkQ5BmOA85PVLjG2wCcCEK+XqsA1786CHMHQwT/qDpM
+AAQAoJ2DOgtFw1UuGfPkIGAqzyY0x1z2
+=tdbQ
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-gcc43.patch b/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-gcc43.patch
new file mode 100644
index 000000000..c98204f9b
--- /dev/null
+++ b/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-gcc43.patch
@@ -0,0 +1,9 @@
+--- wxmacmolplt-7.2.1/src/Geometries.cpp.orig	2009-02-13 14:06:06.000000000 +0300
++++ wxmacmolplt-7.2.1/src/Geometries.cpp	2009-02-13 14:06:54.000000000 +0300
+@@ -1,5 +1,6 @@
+ #include <iomanip>
+ #include <iostream>
++#include <stdlib.h>
+ 
+ #include "Geometries.h"
+ #include "Globals.h"
diff --git a/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-ming.patch b/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-ming.patch
new file mode 100644
index 000000000..e633f5288
--- /dev/null
+++ b/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.2.1-ming.patch
@@ -0,0 +1,11 @@
+--- configure.ac.orig	2008-05-13 19:27:34.000000000 +0300
++++ configure.ac	2008-11-14 21:41:44.000000000 +0200
+@@ -39,7 +39,7 @@
+     [AC_SUBST([LIBMING], ["-lming"]) AC_DEFINE([HAVE_LIBMING])],
+     [if test "x$with_ming" != xyes; then
+         AC_MSG_FAILURE([--with-ming was given, but test for ming failed])
+-    fi], -lpng)])
++    fi], -lpng -lgif)])
+ 
+ WXCONFIG=wx-config
+ AC_ARG_WITH(wx-config,
diff --git a/sci-chemistry/wxmacmolplt/metadata.xml b/sci-chemistry/wxmacmolplt/metadata.xml
new file mode 100644
index 000000000..1aea1ef06
--- /dev/null
+++ b/sci-chemistry/wxmacmolplt/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-chemistry</herd>
+<use>
+  <flag name='ming'>Add support for flash movie generation</flag>
+</use>
+</pkgmetadata>
diff --git a/sci-chemistry/wxmacmolplt/wxmacmolplt-7.2.1.ebuild b/sci-chemistry/wxmacmolplt/wxmacmolplt-7.2.1.ebuild
new file mode 100644
index 000000000..78e09e16a
--- /dev/null
+++ b/sci-chemistry/wxmacmolplt/wxmacmolplt-7.2.1.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+inherit eutils
+
+DESCRIPTION="Chemical 3D graphics program with GAMESS input builder"
+HOMEPAGE="http://www.scl.ameslab.gov/~brett/MacMolPlt/"
+
+SRC_URI="http://www.scl.ameslab.gov/~brett/MacMolPlt/download/${P}.tar.gz"
+LICENSE="GPL-2"
+
+KEYWORDS="~amd64 ~x86"
+SLOT="0"
+
+IUSE="ming"
+
+RDEPEND="x11-libs/wxGTK
+		ming? ( media-libs/ming )"
+
+DEPEND="${RDEPEND}"
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	epatch "${FILESDIR}/${P}-ming.patch" 
+	epatch "${FILESDIR}/${P}-gcc43.patch"
+}
+
+src_compile() {
+	econf $(use_with ming) || die "configure failed"
+	emake || die "make failed"
+}
+
+src_install() {
+	emake DESTDIR="${D}" install || die "install failed"
+	doicon resources/${PN}.png
+	make_desktop_entry ${PN} wxMacMolPlt ${PN}.png Education
+}
diff --git a/sys-cluster/mpich2/Manifest b/sys-cluster/mpich2/Manifest
index b370b944e..c355ba69d 100644
--- a/sys-cluster/mpich2/Manifest
+++ b/sys-cluster/mpich2/Manifest
@@ -1,10 +1,21 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX eselect.mpi.mpich2 226 RMD160 62e00e1f67ff5cc088d7aa3ef082241afef33bde SHA1 f89ddfb1a10251f5023093f6577ebb8265d55627 SHA256 ffad3f539f008c597077aee91a7c635968311c8b3124619acb727facd0d1e99e
 AUX mpd.conf 48 RMD160 289de9bb40759e3f71229cf47e4d2af83703a85f SHA1 244eee76dbf4ff269e4489d5cc7c3577c6c1fa6b SHA256 ae740cacaf2cb798921cb2092f5af98de67445e27af3f88858f3e6d2bbb127f4
 AUX mpich2-1.0.8-gforker-install-alt-fix.patch 621 RMD160 5b9904ae02f1c1098fdfd2dc4717610f89469afd SHA1 a33bcefa87d990a678436ebfac70976069a7f90d SHA256 a79e469b08e0a3f6c17ec7ec7ea01d3a56a553803fefd24f3794237eead36ced
 AUX mpich2-1.0.8-mpdconf-env.patch 5041 RMD160 c3d9f6ebd43443a24614da030253cf8c503afd59 SHA1 5b453a171f8b1dce93e3c2e675e5b3d4f05514e8 SHA256 b8c81614bba8c748db2ec24a7683d27b3a0430950fecd5644fd1f97f8e5ab2f9
+AUX mpich2-1.0.8-pkgconfig.patch 928 RMD160 5ce7a800423f250dba0dd69560abebf845e7e556 SHA1 afba6883d1204a4b7c082af7e976186153263d64 SHA256 7f8dcafcb0d138130a684284d9bca86e4834f74a5132f0fef4556391abf43f8e
 AUX mpich2-1.0.8-site-packages-py.patch 7534 RMD160 93b2cab20620da379615eaf3bfc7279384987722 SHA1 706313c20e1d4d6a4a060c8ac36befdb5ee3b926 SHA256 a857e7c0effa7cdd62c1bc1bd054b4746764246410062d373e7e0892bcd20df8
 AUX mpich2.envd 45 RMD160 e29a0d617bbc15cc42d3088f8a79c1c715b353fa SHA1 765b885d0e1d65fe7ba845cf72e3e923613d6514 SHA256 d6f128f84e1d015922af42e1280586b84737740b2517cc0b35f498b571f252f9
 DIST mpich2-1.0.8.tar.gz 17237476 RMD160 646cf50fbdc60a49809f4d0a6bcaf2835844db1f SHA1 41d6f6ce1034ecec5c14fb03592730ae2dd071e5 SHA256 7551ce20f3ef366567c566d08782323360b5dbd2d15d816e41c10b5f96eaf369
-EBUILD mpich2-1.0.8.ebuild 5772 RMD160 484f6d95da65bfd71fa836fe16ebaf4624f8c0a8 SHA1 af3e3ebc591ee939b59d79715853d274a7c38b06 SHA256 5d4b169c491c3362e026928b95514aa43dcc3dede201a2169fcb4b6246c6c519
-MISC ChangeLog 333 RMD160 c04eb3fecf6e33167b02011a9d0a751a7ca8c0f0 SHA1 ca2856d555418df1a17320926653b8e5ee50aa6d SHA256 b852325d09d1dde584d1c6ab6b72c3db3801a0cbd43e0f25fcb923f6ca988ce3
+EBUILD mpich2-1.0.8.ebuild 5948 RMD160 885d12edafe1c92f92fc9b66bfdda28321fb884f SHA1 1f9ec9ff94803d27c3641670f7a3500e5fa602d0 SHA256 6da5a9383cdae968a741752d0018ef8b422cf740c123ec412b8003a79120c497
+MISC ChangeLog 711 RMD160 d9d51438c4514d4812653b49ada1c9b99ce7c840 SHA1 d20de4cf497201863154a3f3063b35eb727d0ac2 SHA256 b66a8ece07c1f114b2186552b4370cd360c48160c7743324633a0a9947b997db
 MISC metadata.xml 468 RMD160 98d955b7fd33a5b54c618424df4bc1237bb91a21 SHA1 eb055936e1a4ecafa846c1b7be6bc8c96d503ba1 SHA256 9516aa2c4536c5bc0555b42af1019a82e0f027ba8e52c0c46bcb5ee3fff8a765
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.9 (GNU/Linux)
+
+iEYEARECAAYFAkmVSfIACgkQ5BmOA85PVLjYsgCbBALSp/y6FmerIScMPe+F44+S
+ENQAniLSc6uXxEb/scBVm1wiQheZVlLv
+=Ql2V
+-----END PGP SIGNATURE-----