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| author |   David Seifert <soap@gentoo.org> | 2016-09-25 11:44:52 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2016-09-25 11:44:52 +0200 |
| commit | cec254823f198e90b0c51750704aab40e9e0c64c (patch) | |
| tree | c4ead9ff5b189e5e5d3791ce4cdbcc6fa46a1a57 | |
| parent | sci-biology/biopython: remove, in main tree (diff) | |
| download | sci-cec254823f198e90b0c51750704aab40e9e0c64c.tar.gz sci-cec254823f198e90b0c51750704aab40e9e0c64c.tar.bz2 sci-cec254823f198e90b0c51750704aab40e9e0c64c.zip | |
sci-biology/vcftools: remove, in main tree
| -rw-r--r-- | sci-biology/vcftools/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/vcftools/metadata.xml | 11 | ||||
| -rw-r--r-- | sci-biology/vcftools/vcftools-0.1.14.ebuild | 55 |
3 files changed, 0 insertions, 67 deletions
diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest deleted file mode 100644 index 0fa99d3bb..000000000 --- a/sci-biology/vcftools/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST vcftools-vcftools-v0.1.14-14-g2543f81.tar.gz 241876 SHA256 9d9eece6e766ec75162d1edc0e95df1710896f4230531cbc92826f53505ec6e5 SHA512 29735d6ab7c1f91c155bc86fdab462cd590fbf296d1f3ad99a99e2a4882a0f30c50cb222d875fbc2d7cf480244385c29184096f083d34cd0ef9b6f93737ef6a9 WHIRLPOOL f3a7ccc443830466157a2168e12fdc5b061456c316b2f0891ab8c9ed4edc96654d39389a5268ecc051092154e20f83efa3de357fa6aaa823fc8b69819d2676da diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml deleted file mode 100644 index 77f6f92e0..000000000 --- a/sci-biology/vcftools/metadata.xml +++ /dev/null @@ -1,11 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">vcftools</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/vcftools/vcftools-0.1.14.ebuild b/sci-biology/vcftools/vcftools-0.1.14.ebuild deleted file mode 100644 index 0e792f8b2..000000000 --- a/sci-biology/vcftools/vcftools-0.1.14.ebuild +++ /dev/null @@ -1,55 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -PERL_EXPORT_PHASE_FUNCTIONS=no -inherit perl-module eutils toolchain-funcs autotools - -MY_P="${PN}_${PV}" - -DESCRIPTION="Tools for working with VCF (Variant Call Format) files" -HOMEPAGE="https://vcftools.github.io - http://vcftools.sourceforge.net" -SRC_URI="https://github.com/vcftools/vcftools/archive/vcftools-vcftools-v0.1.14-14-g2543f81.tar.gz" -#SRC_URI="https://codeload.github.com/vcftools/vcftools/legacy.tar.gz/master -> ${P}.tar.gz" -#SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz" - -LICENSE="LGPL-3" -SLOT="0" -KEYWORDS="~x86 ~amd64" -IUSE="lapack" - -RDEPEND="lapack? ( virtual/lapack )" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -S="${WORKDIR}"/vcftools-vcftools-2543f81 -#S="${WORKDIR}/${MY_P}" - -src_prepare() { - # epatch "${FILESDIR}"/${P}-buildsystem.patch - tc-export CXX PKG_CONFIG - eautoreconf -} - -src_configure(){ - econf --enable-pca # --with-pmdir=DIR install Perl modules in DIR -} - -#src_compile() { -# local myconf -# use lapack && myconf="VCFTOOLS_PCA=1" -# emake -C cpp ${myconf} -#} - -src_install(){ - perl_set_version - dobin src/cpp/"${PN}" - doman src/cpp/"${PN}".1 - insinto "${VENDOR_LIB}" - doins src/perl/*.pm - dobin src/perl/{fill,vcf}-* - dodoc README.md -} |