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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-04-01 21:11:50 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-04-01 21:11:50 +0200 |
| commit | efe8a4f25b66f0f3dbd800e26d8f12973330b5c8 (patch) | |
| tree | af0400e86834103561330f169c24cd14d96d1284 | |
| parent | dev-python/hdf5storage: Version bump (diff) | |
| download | sci-efe8a4f25b66f0f3dbd800e26d8f12973330b5c8.tar.gz sci-efe8a4f25b66f0f3dbd800e26d8f12973330b5c8.tar.bz2 sci-efe8a4f25b66f0f3dbd800e26d8f12973330b5c8.zip | |
sci-biology/MolBioLib: yet another package with bundled samtools, bamtools etc.
Package-Manager: portage-2.2.28
| -rw-r--r-- | sci-biology/MolBioLib/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/MolBioLib/MolBioLib-5.ebuild | 31 | ||||
| -rw-r--r-- | sci-biology/MolBioLib/metadata.xml | 12 |
3 files changed, 44 insertions, 0 deletions
diff --git a/sci-biology/MolBioLib/Manifest b/sci-biology/MolBioLib/Manifest new file mode 100644 index 000000000..63714ecca --- /dev/null +++ b/sci-biology/MolBioLib/Manifest @@ -0,0 +1 @@ +DIST MolBioLib_public.version5.tar.gz 2414384 SHA256 694a5682a09caea46dc531bb48a68817873633a31aa92177eb2ba0a253a38eb9 SHA512 056c38bcb65b845b32678fb8c5d758023154c07085414194e98e58281e61e475dca7321c8d684955c88bf459bc92c9d39f8b6091d0b804581e6f6e6ecabe3832 WHIRLPOOL 6d089274ed3f505eb887536b5a4d46e5bbb82951c27fbf684fb820605a6fb416a7e888c9d1a613cb29a3cf5a2b43a192a0781f56a769b793a8986097d2411e43 diff --git a/sci-biology/MolBioLib/MolBioLib-5.ebuild b/sci-biology/MolBioLib/MolBioLib-5.ebuild new file mode 100644 index 000000000..5cb9ea210 --- /dev/null +++ b/sci-biology/MolBioLib/MolBioLib-5.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +DESCRIPTION="C++11 framework for rapid develop and deploy of bioinformatic tasks" +HOMEPAGE="https://sourceforge.net/projects/molbiolib" +SRC_URI="https://sourceforge.net/projects/molbiolib/files/MolBioLib_public.version${PV}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +# contains bundled samtools-0.1.18 and bamtools (pezmaster31-bamtools-d553a62) which contains jsoncpp +# also needs app-doc/doxygen +DEPEND="dev-lang/perl + sys-devel/gcc:* + sys-devel/clang + >=sci-biology/samtools-0.1.18:0 + <sci-biology/samtools-1:0" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/MolBioLib + +src_compile(){ + perl MakeAllApps.pl || die +} + +# src_install() needs to be written diff --git a/sci-biology/MolBioLib/metadata.xml b/sci-biology/MolBioLib/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/sci-biology/MolBioLib/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |