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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-06-24 16:14:54 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-06-24 16:14:54 +0200 |
| commit | 33cea93a515d0fa559263ce382d76739bc4b4338 (patch) | |
| tree | 10617f2b18fb5cd37535ca1822d0b60651b3fce2 /sci-biology/RSeQC | |
| parent | Merge remote-tracking branch 'github/master' (diff) | |
| download | sci-33cea93a515d0fa559263ce382d76739bc4b4338.tar.gz sci-33cea93a515d0fa559263ce382d76739bc4b4338.tar.bz2 sci-33cea93a515d0fa559263ce382d76739bc4b4338.zip | |
sci-biology/RSeQC: new package
Package-Manager: portage-2.2.18
Diffstat (limited to 'sci-biology/RSeQC')
| -rw-r--r-- | sci-biology/RSeQC/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/RSeQC/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/RSeQC/RSeQC-2.6.1.ebuild | 30 | ||||
| -rw-r--r-- | sci-biology/RSeQC/metadata.xml | 9 |
4 files changed, 50 insertions, 0 deletions
diff --git a/sci-biology/RSeQC/ChangeLog b/sci-biology/RSeQC/ChangeLog new file mode 100644 index 000000000..854e7ecdf --- /dev/null +++ b/sci-biology/RSeQC/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/RSeQC +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*RSeQC-2.6.1 (24 Jun 2015) + + 24 Jun 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +RSeQC-2.6.1.ebuild, + +metadata.xml: + sci-biology/RSeQC: new package diff --git a/sci-biology/RSeQC/Manifest b/sci-biology/RSeQC/Manifest new file mode 100644 index 000000000..6852e051a --- /dev/null +++ b/sci-biology/RSeQC/Manifest @@ -0,0 +1,2 @@ +DIST RSeQC-2.6.1.tar.gz 1654756 SHA256 600c09fb5c85e6249030f019949a6e0e131230008fde363f1603444f8a009e96 SHA512 9adf44be989764c4095e91a4de76d5d96842956ff855392c11d644f99010c2e06ded80ab2373e636e59f544fb508839ea6d4ed6e202695ff31c42a68c1ceb86b WHIRLPOOL 9a4778a4f7c84ad7ee44a00149e09ad3c560a1dffc5e9be1edc810f69bc14c7e3bb184213434899eb8c4b0c98c227b31108c60b9615beb807d38a66349c4f0e6 +DIST fetchChromSizes 2695 SHA256 a349673d472edb2842298b6be1c13703c20e29d7a1dfd317f018b7e1d55f5ddc SHA512 23405beabb4f42b5cc5b569d9948d070e354ef2be10030b51ba3510865ab4e25bee8aab7283d9b6cbd7df454159a6f89e58ad8f5ee6a541046ad5a72f65019e8 WHIRLPOOL dc6b4d90e49db600ba83a7f60f3aa1665a4deb9cc016ceae3d9ccaa8a452965f4474c0550c0199d9b2f64c7805251943337f1c0691497539358751a41348005c diff --git a/sci-biology/RSeQC/RSeQC-2.6.1.ebuild b/sci-biology/RSeQC/RSeQC-2.6.1.ebuild new file mode 100644 index 000000000..a6cdfed4b --- /dev/null +++ b/sci-biology/RSeQC/RSeQC-2.6.1.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Utilities for RNA-seq data quality control" +HOMEPAGE="http://rseqc.sourceforge.net" +SRC_URI="http://sourceforge.net/projects/rseqc/files/RSeQC-2.6.1.tar.gz + http://sourceforge.net/projects/rseqc/files/other/fetchChromSizes" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="=sci-biology/pysam-0.7.5[${PYTHON_USEDEP}]" +RDEPEND="${DEPEND}" + +# pysam (v0.7.5) was built in RSeQC. The latest version of pysam may not be compatible with RSeQC. + +python_install(){ + distutils-r1_python_install + rm -r "${D}$(python_get_sitedir)"/pysam + dobin "${DISTDIR}"/fetchChromSizes +} diff --git a/sci-biology/RSeQC/metadata.xml b/sci-biology/RSeQC/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/RSeQC/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> |