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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-01-07 23:30:38 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-01-07 23:30:38 +0100 |
| commit | 048f49ddebd47dfe85fdffad7ec869913a6ccec7 (patch) | |
| tree | 60d8c04784048411762dd3051b04f8633264a06f /sci-biology/SEECER | |
| parent | Initial ebuild (diff) | |
| download | sci-048f49ddebd47dfe85fdffad7ec869913a6ccec7.tar.gz sci-048f49ddebd47dfe85fdffad7ec869913a6ccec7.tar.bz2 sci-048f49ddebd47dfe85fdffad7ec869913a6ccec7.zip | |
Initial ebuild
Diffstat (limited to 'sci-biology/SEECER')
| -rw-r--r-- | sci-biology/SEECER/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/SEECER/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/SEECER/SEECER-0.1.3.ebuild | 33 | ||||
| -rw-r--r-- | sci-biology/SEECER/metadata.xml | 9 |
4 files changed, 54 insertions, 0 deletions
diff --git a/sci-biology/SEECER/ChangeLog b/sci-biology/SEECER/ChangeLog new file mode 100644 index 000000000..1e865a6ac --- /dev/null +++ b/sci-biology/SEECER/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/SEECER +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*SEECER-0.1.3 (07 Jan 2015) + + 07 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +SEECER-0.1.3.ebuild, +metadata.xml: + initial ebuild + diff --git a/sci-biology/SEECER/Manifest b/sci-biology/SEECER/Manifest new file mode 100644 index 000000000..72d9cd2b8 --- /dev/null +++ b/sci-biology/SEECER/Manifest @@ -0,0 +1,2 @@ +DIST SEECER-0.1.3.tar.gz 9457477 SHA256 bfe7885170810e99d0b2459fa84b94f6695457c393f6153c8d74db15a688e2c2 SHA512 7e7c4a8525ffd9104402d7eb10f7fd99648214dfdc6dc2cd40ed22a641dbf80ddc2e5945cdc5d3a8776f781e069c5490825f3c132843d2ea6ce26440f84e07d3 WHIRLPOOL af60f230f014a7231b0a4b5ac41056f193dabdd8af57b4d142a2f0f005d6d613526c4b5220c790437382923b386481ac45ef2a243d8f7b44323be1fb87a3a723 +DIST manual.pdf 233688 SHA256 f8f1bbc6053158ed080545692dbd9db47a8429d0900d5df9109e6a9e55295ee6 SHA512 735132309c00ff5b46d9495e0b248727bb7fac98fff830ce0f9b9d6620e592c65b4850945157706fafcf81b396fc52071bd7671cb31ea20dfcb959b16b51cab6 WHIRLPOOL 38d8fe7d904c155728c12a26fee79b64ff9695be616babfc38f83c17c03a1d3c396834447bc97e8345e770984c138d09dc0bfc9d8eef1e5dc037170711d78811 diff --git a/sci-biology/SEECER/SEECER-0.1.3.ebuild b/sci-biology/SEECER/SEECER-0.1.3.ebuild new file mode 100644 index 000000000..7f3833ea7 --- /dev/null +++ b/sci-biology/SEECER/SEECER-0.1.3.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Error corrector for RNA-Seq reads" +HOMEPAGE="http://sb.cs.cmu.edu/seecer/" +SRC_URI="http://sb.cs.cmu.edu/seecer/downloads/SEECER-0.1.3.tar.gz + http://sb.cs.cmu.edu/seecer/downloads/manual.pdf" + +LICENSE="" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="sci-libs/gsl + sci-biology/seqan + sci-biology/jellyfish" +RDEPEND="${DEPEND}" + +S="${S}"/SEECER + +# doh, it install /usr/bin/seecer (note the lowercase letters) + +# checking for x86_64-pc-linux-gnu-gcc option to support OpenMP... -fopenmp +# +# Uses: +# libgomp.so.1 => /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/libgomp.so.1 (0x00007f7853faf000) + + +# dobin bin/run_seecer.sh +# dodoc "${DISTDIR}"/manual.pdf diff --git a/sci-biology/SEECER/metadata.xml b/sci-biology/SEECER/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/SEECER/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> |