sci-biology/clover: Version BUmp; fixed license; respect LDFLAGS

Package-Manager: portage-2.2.0_alpha180

1 files changed, 40 insertions, 0 deletions

diff --git a/sci-biology/clover/clover-2011.10.24.ebuild b/sci-biology/clover/clover-2011.10.24.ebuild
new file mode 100644
index 000000000..cfb057432
--- /dev/null
+++ b/sci-biology/clover/clover-2011.10.24.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit toolchain-funcs versionator
+
+MY_PV=$(replace_all_version_separators '-')
+
+DESCRIPTION="Cis-eLement OVERrepresentation: Detection of functional DNA motifs"
+HOMEPAGE="http://zlab.bu.edu/clover/"
+SRC_URI="
+	http://zlab.bu.edu/~mfrith/downloads/${PN}-${MY_PV}.tar.gz
+	http://zlab.bu.edu/clover/jaspar2009core"
+
+LICENSE="freedist"
+SLOT="0"
+IUSE=""
+KEYWORDS="~x86 ~amd64"
+
+S="${WORKDIR}/${PN}-${MY_PV}"
+
+src_prepare() {
+	sed \
+		-e "s:g++:$(tc-getCXX) \$(LDFLAGS):; s:-Wall -O3:${CFLAGS}:" \
+		-i Makefile || die "sed failed"
+}
+
+src_install() {
+	dobin clover
+	insinto /usr/share/${PN}
+	doins "${DISTDIR}/jaspar2009core"
+}
+
+pkg_postinst() {
+	einfo "The motif library jaspar2009core has been installed in"
+	einfo "    /usr/share/clover/jaspar2009core"
+	einfo "You can pass this library to clover for motif search, or use your own library."
+}