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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-05-08 00:33:06 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-05-08 00:33:06 +0200 |
| commit | 2ae549fb69309b8ab8537b3e9a8ea158d375cf1d (patch) | |
| tree | 5a63e549a08a256a58d30f8d0e61aa7284594ae8 /sci-biology | |
| parent | sci-biology/kat: various fixes for issue #867 (diff) | |
| download | sci-2ae549fb69309b8ab8537b3e9a8ea158d375cf1d.tar.gz sci-2ae549fb69309b8ab8537b3e9a8ea158d375cf1d.tar.bz2 sci-2ae549fb69309b8ab8537b3e9a8ea158d375cf1d.zip | |
sci-biology/kat: removing patches for 2.4.1 version
Package-Manager: Portage-2.3.31, Repoman-2.3.9
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/kat/files/kat-2.4.1-make_no_pykat.patch | 15 | ||||
| -rw-r--r-- | sci-biology/kat/files/kat-2.4.1-no_static_build.patch | 43 |
2 files changed, 0 insertions, 58 deletions
diff --git a/sci-biology/kat/files/kat-2.4.1-make_no_pykat.patch b/sci-biology/kat/files/kat-2.4.1-make_no_pykat.patch deleted file mode 100644 index 7ba08010c..000000000 --- a/sci-biology/kat/files/kat-2.4.1-make_no_pykat.patch +++ /dev/null @@ -1,15 +0,0 @@ -diff --git a/Makefile.am b/Makefile.am -index 5f0f42e..4da6c05 100644 ---- a/Makefile.am -+++ b/Makefile.am -@@ -21,10 +21,6 @@ dist_noinst_SCRIPTS = autogen.sh antigen.sh build_boost.sh - # SRC DIRS - make_dirs=deps/jellyfish-2.2.0 deps/seqan-library-2.0.0 lib src tests - --if MAKE_PYKAT -- make_dirs += scripts --endif -- - if MAKE_DOCS - make_dirs += doc - endif diff --git a/sci-biology/kat/files/kat-2.4.1-no_static_build.patch b/sci-biology/kat/files/kat-2.4.1-no_static_build.patch deleted file mode 100644 index c8ac6c901..000000000 --- a/sci-biology/kat/files/kat-2.4.1-no_static_build.patch +++ /dev/null @@ -1,43 +0,0 @@ -diff --git a/configure.ac b/configure.ac -index b68c514..00c8a2e 100644 ---- a/configure.ac -+++ b/configure.ac -@@ -159,11 +159,11 @@ if [[ "${make_pykat}" == "yes" ]]; then - AM_CPPFLAGS="${ZLIB_CPPFLAGS} ${PYTHON_CPPFLAGS}" - AM_LIBS="${PTHREAD_CFLAGS} ${ZLIB_LIB} ${RT_LIB} ${PYTHON_EXTRA_LIBS} ${PYTHON_LIBS}" - #AM_LDFLAGS="${ZLIB_LDFLAGS} ${PYTHON_EXTRA_LDFLAGS} ${PYTHON_RPATH} -static-libstdc++" -- AM_LDFLAGS="${ZLIB_LDFLAGS} -static-libstdc++ ${PYTHON_RPATH}" -+ AM_LDFLAGS="${ZLIB_LDFLAGS} ${PYTHON_RPATH}" - else - AM_CPPFLAGS="${ZLIB_CPPFLAGS}" - AM_LIBS="${PTHREAD_CFLAGS} ${ZLIB_LIB} ${RT_LIB}" -- AM_LDFLAGS="${ZLIB_LDFLAGS} -static-libstdc++" -+ AM_LDFLAGS="${ZLIB_LDFLAGS}" - fi - - AC_SUBST([AM_CPPFLAGS]) -diff --git a/deps/jellyfish-2.2.0/Makefile.am b/deps/jellyfish-2.2.0/Makefile.am -index 8f6fffd..d6e0a3d 100644 ---- a/deps/jellyfish-2.2.0/Makefile.am -+++ b/deps/jellyfish-2.2.0/Makefile.am -@@ -7,7 +7,7 @@ man1_MANS = doc/kat_jellyfish.man - pkgconfigdir = $(libdir)/pkgconfig - pkgconfig_DATA = kat_jellyfish.pc - --AM_LDFLAGS = $(ZLIB_LDFLAGS) $(ZLIB_LIB) -lpthread -static-libstdc++ # $(VALGRIND_LIBS) -+AM_LDFLAGS = $(ZLIB_LDFLAGS) $(ZLIB_LIB) -lpthread # $(VALGRIND_LIBS) - AM_CPPFLAGS = $(ZLIB_CPPFLAGS) -I$(top_srcdir) -I$(top_srcdir)/include # $(VALGRIND_CFLAGS) - AM_CXXFLAGS = $(ALL_CXXFLAGS) -Wall -Wnon-virtual-dtor -Wno-deprecated-declarations - -diff --git a/src/Makefile.am b/src/Makefile.am -index a2ae071..71def5c 100644 ---- a/src/Makefile.am -+++ b/src/Makefile.am -@@ -19,7 +19,6 @@ kat_CPPFLAGS = \ - @AM_CPPFLAGS@ - - kat_LDFLAGS = \ -- -static \ - @AM_LDFLAGS@ - - kat_LDADD = \ |