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diff --git a/Makefile.am b/Makefile.am
index 5f0f42e..4da6c05 100644
--- a/Makefile.am
+++ b/Makefile.am
@@ -21,10 +21,6 @@ dist_noinst_SCRIPTS = autogen.sh antigen.sh build_boost.sh
# SRC DIRS
make_dirs=deps/jellyfish-2.2.0 deps/seqan-library-2.0.0 lib src tests
-if MAKE_PYKAT
- make_dirs += scripts
-endif
-
if MAKE_DOCS
make_dirs += doc
endif
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