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authorMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2014-07-04 18:51:12 +0200
committerMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2014-07-04 18:51:12 +0200
commit2ff987f23c228b8e4494df4908bbce11f9c3eec0 (patch)
tree8aa367fc578e9fdbaa6615ec8e076776a5d25f15 /sci-biology
parentsci-biology/Atlas-Link: noted dependence, see bug #516366 (diff)
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sci-biology/emboss-6.3.1_p4-r2: added a patch for 'undefined reference to c_plwid' bug #493724
Package-Manager: portage-2.2.7
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/emboss/ChangeLog6
-rw-r--r--sci-biology/emboss/emboss-6.3.1_p4-r2.ebuild1
-rw-r--r--sci-biology/emboss/files/emboss-6.3.1_p4-r2_rename_plwid_to_plwidth.patch13
3 files changed, 20 insertions, 0 deletions
diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog
index 9dd52d92e..b047e8c05 100644
--- a/sci-biology/emboss/ChangeLog
+++ b/sci-biology/emboss/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.61 2011/03/09 16:29:05 jlec Exp $
+ 04 Jul 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +files/emboss-6.3.1_p4-r2_rename_plwid_to_plwidth.patch,
+ emboss-6.3.1_p4-r2.ebuild:
+ sci-biology/emboss-6.3.1_p4-r2: added a patch for 'undefined reference to
+ c_plwid' bug #493724
+
24 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
emboss-6.3.1_p4-r2.ebuild:
sci-biology/emboss-6.3.1_p4-r2: add plplot dependency, trying to get rid of a
diff --git a/sci-biology/emboss/emboss-6.3.1_p4-r2.ebuild b/sci-biology/emboss/emboss-6.3.1_p4-r2.ebuild
index 59a7d4955..962d4722e 100644
--- a/sci-biology/emboss/emboss-6.3.1_p4-r2.ebuild
+++ b/sci-biology/emboss/emboss-6.3.1_p4-r2.ebuild
@@ -42,6 +42,7 @@ src_prepare() {
epatch "${WORKDIR}"/${PF}.patch
epatch "${FILESDIR}/${PF}"_plcol.patch
epatch "${FILESDIR}/${PF}"_compilations-paths.patch
+ epatch "${FILESDIR}/${PF}"_rename_plwid_to_plwidth.patch
# cp "${FILESDIR}"/ax_lib_mysql.m4 "${S}"/m4/mysql.m4
emboss_src_prepare
autoreconf -vfi
diff --git a/sci-biology/emboss/files/emboss-6.3.1_p4-r2_rename_plwid_to_plwidth.patch b/sci-biology/emboss/files/emboss-6.3.1_p4-r2_rename_plwid_to_plwidth.patch
new file mode 100644
index 000000000..e66a696d6
--- /dev/null
+++ b/sci-biology/emboss/files/emboss-6.3.1_p4-r2_rename_plwid_to_plwidth.patch
@@ -0,0 +1,13 @@
+--- EMBOSS-6.3.1/ajax/graphics/ajgraph.c.ori 2014-07-04 18:25:18.000000000 +0200
++++ EMBOSS-6.3.1/ajax/graphics/ajgraph.c 2014-07-04 18:25:32.000000000 +0200
+@@ -1329,8 +1329,8 @@
+
+ void ajGraphicsSetPenwidth(float penwidth)
+ {
+- ajDebug("=g= plwid(%.2f) [width]\n", penwidth);
+- plwid((PLINT)penwidth);
++ ajDebug("=g= plwidth(%.2f) [width]\n", penwidth);
++ plwidth((PLINT)penwidth);
+
+ return;
+ }