diff options
| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-07-04 15:41:22 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-07-04 15:41:22 +0200 |
| commit | 76473186d32683782345c0271a225416c49e7d27 (patch) | |
| tree | 3018d34fddb96b9b58ab4dcf4e8662ab8a5913a7 /sci-biology | |
| parent | sci-biology/gap2caf: remove -rpath-link from src/Makefile (diff) | |
| download | sci-76473186d32683782345c0271a225416c49e7d27.tar.gz sci-76473186d32683782345c0271a225416c49e7d27.tar.bz2 sci-76473186d32683782345c0271a225416c49e7d27.zip | |
sci-biology/Atlas-Link: noted dependence, see bug #516366
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild | 26 | ||||
| -rw-r--r-- | sci-biology/Atlas-Link/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/Atlas-Link/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/Atlas-Link/metadata.xml | 9 |
4 files changed, 46 insertions, 0 deletions
diff --git a/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild b/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild new file mode 100644 index 000000000..bb15e64d1 --- /dev/null +++ b/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit perl-module + +DESCRIPTION="Links and orients genome sequence contigs using mate-pair information or superscaffolds .agp files" +HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-link" +SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas_Link/Atlas-link.tar.gz" + +LICENSE="HGSC-BCM" +SLOT="0" +KEYWORDS="" +IUSE="" + +# https://github.com/gitpan/Algorithm-ClusterPoints +DEPEND="dev-lang/perl + dev-perl/Graph + dev-perl/Algorithm-ClusterPoints + dev-perl/XML-DOM + dev-perl/Statistics-Descriptive" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/Atlas-link diff --git a/sci-biology/Atlas-Link/ChangeLog b/sci-biology/Atlas-Link/ChangeLog new file mode 100644 index 000000000..cb92c11d8 --- /dev/null +++ b/sci-biology/Atlas-Link/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/Atlas-Link +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*Atlas-Link-0.01 (04 Jul 2014) + + 04 Jul 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +Atlas-Link-0.01.ebuild, +metadata.xml: + sci-biology/Atlas-Link: noted dependence, see bug #516366 + diff --git a/sci-biology/Atlas-Link/Manifest b/sci-biology/Atlas-Link/Manifest new file mode 100644 index 000000000..205302da8 --- /dev/null +++ b/sci-biology/Atlas-Link/Manifest @@ -0,0 +1 @@ +DIST Atlas-link.tar.gz 4212464 SHA256 5857beb6c8560c85b1271e12d28b00e4b93684357dfd2b49f61bfb78437046eb SHA512 ac3595ca81034de2eb2b4dc206e6e29c59fbb4fededfd2dee3b597ce47bc436907587fc59ac753d81c4ca0fc627e0a9961ebebd7bfcc002df634466c17fd2bce WHIRLPOOL 6788603eb7fd240c09de3f78a7b45a1d1494748ce006252905d469a36f27cc36f9fdc9c466a11ad6f02b92e208273ec95c12030eb1955d236c4685768392f0cc diff --git a/sci-biology/Atlas-Link/metadata.xml b/sci-biology/Atlas-Link/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/Atlas-Link/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> |