diff options
author | Justin Lecher (jlec) <jlec@gentoo.org> | 2010-02-21 09:15:06 +0100 |
---|---|---|
committer | Justin Lecher (jlec) <jlec@gentoo.org> | 2010-02-21 09:16:13 +0100 |
commit | b996a11e2d4456ba830490967c8da5127d5050ba (patch) | |
tree | f32c771bec748cd38ad92b44e79b7b7c774dfa1a /sci-chemistry | |
parent | Removed old versions of Macaulay2 and updated deps (diff) | |
download | sci-b996a11e2d4456ba830490967c8da5127d5050ba.tar.gz sci-b996a11e2d4456ba830490967c8da5127d5050ba.tar.bz2 sci-b996a11e2d4456ba830490967c8da5127d5050ba.zip |
InCvs
Diffstat (limited to 'sci-chemistry')
-rw-r--r-- | sci-chemistry/caver/ChangeLog | 60 | ||||
-rw-r--r-- | sci-chemistry/caver/Manifest | 4 | ||||
-rw-r--r-- | sci-chemistry/caver/caver-2.0.003.ebuild | 46 | ||||
-rw-r--r-- | sci-chemistry/caver/metadata.xml | 5 |
4 files changed, 0 insertions, 115 deletions
diff --git a/sci-chemistry/caver/ChangeLog b/sci-chemistry/caver/ChangeLog deleted file mode 100644 index 9ccff5c7c..000000000 --- a/sci-chemistry/caver/ChangeLog +++ /dev/null @@ -1,60 +0,0 @@ -# ChangeLog for sci-chemistry/caver -# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - -*caver-2.0.003 (01 Jul 2009) - - 01 Jul 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> - +caver-2.0.003.ebuild, +metadata.xml: - complete change in way you can use caver based on java and only as pymol - plugin available - - 06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml: - Add USE flag description to metadata wrt GLEP 56. - - 15 Mar 2007; Danny van Dyk <kugelfang@gentoo.org> caver-0.99.2.ebuild, - caver-0.99.4.ebuild: - QA: Removed illegal use of ${ROOT}. Bug #168043 - - 22 Feb 2007; Jeff Gardner <je_fro@gentoo.org> Manifest: - Updating for manifest2. - - 06 Jan 2007; Danny van Dyk <kugelfang@gentoo.org> -caver-0.99.1.ebuild: - QA: Removed unused versions. - - 20 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 20 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; caver-0.99.2.ebuild: - Stable on x86/ppc. - -*caver-0.99.4 (18 Aug 2006) - - 18 Aug 2006; Olivier Fisette <ribosome@gentoo.org> - +files/caver-0.99.4-001.patch, +caver-0.99.4.ebuild: - New upstream version; thanks to Richard Daigle <rdaigle@rsvs.ulaval.ca> for - his work (fixes bug #144329). Added pdb2caver script; thanks to Rossen - Apostolov <rossen@protein.osaka-u.ac.jp> for his work (fixes bug #141549). - Added man page. Ebuild clean-up. - - 05 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz <spyderous@gentoo.org>; metadata.xml: - Update to my new email address. - -*caver-0.99.2 (14 May 2006) - - 14 May 2006; Donnie Berkholz <dberkholz@gentoo.org>; +caver-0.99.2.ebuild: - Bump. This version does a much better job of finding stuff, and the pymol - plugin's a lot more capable. - -*caver-0.99.1 (20 Dec 2005) - - 20 Dec 2005; Donnie Berkholz <dberkholz@gentoo.org>; +metadata.xml, - +caver-0.99.1.ebuild: - New package providing rapid, accurate and fully automated calculation of - pathways leading from buried cavities to outside solvent in static and - dynamic protein structures. Also has a neat PyMol plugin. - diff --git a/sci-chemistry/caver/Manifest b/sci-chemistry/caver/Manifest deleted file mode 100644 index bc53fc9e0..000000000 --- a/sci-chemistry/caver/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -DIST caver2_0-v003_pymol_plugin.zip 3605820 RMD160 ab937f9090c31dbf078b08fdf582d2cad7717658 SHA1 b18ae1b011c906fe7fe5d94f6ee3bac185c352c6 SHA256 af82aff17103d31385b401edd4fc2c5da91d5ddef7d96b41e0b6e37b5adaef08 -EBUILD caver-2.0.003.ebuild 1268 RMD160 7631f6de18aafc0c29feb334ab4a47a439023b90 SHA1 dfd66fab4465255a335c9a1e464b484d4948a8f1 SHA256 3380bf6a701134454e0a3d91bdc5ae4b1a986ad98d08bfc0074dafc2597c609a -MISC ChangeLog 2242 RMD160 b70ff6eff9187b16f14e748196541ca358c02416 SHA1 6eeb262b6ab5faff54d3504a98b6b93ab6505881 SHA256 347e1114759a69d8970ec2fd1f30c246826f416cb346c73112c5b7c052ff8d5d -MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852 diff --git a/sci-chemistry/caver/caver-2.0.003.ebuild b/sci-chemistry/caver/caver-2.0.003.ebuild deleted file mode 100644 index 6c9c29aec..000000000 --- a/sci-chemistry/caver/caver-2.0.003.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -inherit multilib python eutils versionator java-utils-2 - -MY_PV="$(replace_version_separator 2 -v $(replace_version_separator 1 _ ${PV}))" -MY_P="${PN}${MY_PV}_pymol_plugin" - -DESCRIPTION="Calculation of pathways from buried cavities to outside solvent in protein structures" -HOMEPAGE="http://loschmidt.chemi.muni.cz/caver/" -SRC_URI="${MY_P}.zip" - -LICENSE="CAVER" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - >=virtual/jre-1.6 - sci-chemistry/pymol" -DEPEND="app-arch/unzip" - -RESTRICT="fetch" - -S="${WORKDIR}/Caver${MY_PV}"/linux_mac - -pkg_nofetch() { - einfo "Download ${MY_P}.tar.gz" - einfo "from ${HOMEPAGE}. This requires registration." - einfo "Place tarballs in ${DISTDIR}." -} - -src_install() { - java-pkg_dojar Caver$(replace_all_version_separators _ ${PV})/*.jar - - java-pkg_jarinto /usr/share/${PN}/lib/lib/ - java-pkg_dojar Caver$(replace_all_version_separators _ ${PV})/lib/*.jar - - sed \ - -e "s:directory/where/jar/with/plugin/is/located:/usr/share/${PN}/lib/:g" \ - -i Caver$(replace_all_version_separators _ ${PV}).py || die - - insinto $(python_get_sitedir)/pmg_tk/startup/ - doins Caver$(replace_all_version_separators _ ${PV}).py || die -} diff --git a/sci-chemistry/caver/metadata.xml b/sci-chemistry/caver/metadata.xml deleted file mode 100644 index 9ac9ffdb3..000000000 --- a/sci-chemistry/caver/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> -<herd>sci-chemistry</herd> -</pkgmetadata> |