sci-libs/libmaus2: version bump to 2.0.689

Package-Manager: Portage-2.3.75, Repoman-2.3.17
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

1 files changed, 45 insertions, 0 deletions

diff --git a/sci-libs/libmaus2/libmaus2-2.0.689.ebuild b/sci-libs/libmaus2/libmaus2-2.0.689.ebuild
new file mode 100644
index 000000000..50b82d5aa
--- /dev/null
+++ b/sci-libs/libmaus2/libmaus2-2.0.689.ebuild
@@ -0,0 +1,45 @@
+# Copyright 2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit autotools
+
+release_data="20191120141844"
+DESCRIPTION="Library for biobambam2"
+HOMEPAGE="https://github.com/gt1/libmaus"
+SRC_URI="https://gitlab.com/german.tischler/${PN}/-/archive/${PV}-release-${release_data}/${P}-release-${release_data}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2"
+
+DEPEND="
+	!sci-libs/libmaus
+	>=sci-libs/io_lib-1.14.11
+	app-arch/snappy
+	sci-libs/fftw
+	sci-libs/hdf5
+	net-libs/gnutls
+	dev-libs/nettle"
+# --with-daligner
+# --with-irods
+# old github.com release tarballs
+# S="${WORKDIR}"/libmaus2-master-27828cd78121d5e4b19c263c5527e462360f5901
+# current gitlab.com release tarballs
+S="${WORKDIR}/${P}-release-${release_data}"
+
+src_configure(){
+	local CONFIG_OPTS
+	use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 )
+	( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 )
+	econf --with-snappy --with-io_lib $CONFIG_OPTS \
+		--with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw
+}
+
+pkg_postinst(){
+	einfo "The io_lib, snappy dependencies are not strictly needed"
+	einfo "but were forced for optimal libmaus2 performance."
+	einfo "igzip is only used if gzip level is set to 11."
+}