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author | 2020-09-27 15:30:24 +0000 | |
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committer | 2020-09-27 15:31:44 +0000 | |
commit | 7c67d4f1945c5407327f63d6e422e63069e5611c (patch) | |
tree | 07aa3f219214122ff6dab09d936c06233a52f0b8 /sys-cluster/openmpi/files | |
parent | sci-visualization/yt: bump python compat (diff) | |
download | sci-7c67d4f1945c5407327f63d6e422e63069e5611c.tar.gz sci-7c67d4f1945c5407327f63d6e422e63069e5611c.tar.bz2 sci-7c67d4f1945c5407327f63d6e422e63069e5611c.zip |
sys-cluster/{mpich{,2},mvapich,openmpi}: drop packages
present in ::gentoo
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
Diffstat (limited to 'sys-cluster/openmpi/files')
4 files changed, 0 insertions, 182 deletions
diff --git a/sys-cluster/openmpi/files/eselect.mpi.openmpi b/sys-cluster/openmpi/files/eselect.mpi.openmpi deleted file mode 100644 index c1a9373f3..000000000 --- a/sys-cluster/openmpi/files/eselect.mpi.openmpi +++ /dev/null @@ -1,8 +0,0 @@ -MPI_CC=@ROOT@usr/bin/mpicc -MPI_CXX=@ROOT@usr/bin/mpic++ -MPI_F77=@ROOT@usr/bin/mpif77 -MPI_FC=@ROOT@usr/bin/mpif90 -CLASS_BASE_MPI_IMP=@BASE_IMP@ -PATH=@ROOT@usr/bin -MANPATH=@ROOT@usr/share/man -LD_LIBRARY_PATH=@ROOT@usr/@LIBDIR@ diff --git a/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch b/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch deleted file mode 100644 index 197430aee..000000000 --- a/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch +++ /dev/null @@ -1,42 +0,0 @@ -From 3bd5897c7ca8ab61fb024957aeae891e204b3e3f Mon Sep 17 00:00:00 2001 -From: Justin Bronder <jsbronder@gmail.com> -Date: Mon, 1 Jul 2013 20:37:17 -0400 -Subject: [PATCH] hooks: disable malloc override inside of Gentoo sandbox - -As described in the comments in the source, Gentoo's own version of -fakeroot, sandbox, also runs into hangs when malloc is overridden. -Sandbox environments can easily be detected by looking for SANDBOX_PID -in the environment. When detected, employ the same fix used for -fakeroot. - -See https://bugs.gentoo.org/show_bug.cgi?id=462602 ---- - opal/mca/memory/linux/hooks.c | 11 +++++++++-- - 1 file changed, 9 insertions(+), 2 deletions(-) - -diff --git a/opal/mca/memory/linux/hooks.c b/opal/mca/memory/linux/hooks.c -index 6a1646f..5ded08c 100644 ---- a/opal/mca/memory/linux/hooks.c -+++ b/opal/mca/memory/linux/hooks.c -@@ -747,9 +747,16 @@ static void opal_memory_linux_malloc_init_hook(void) - "fakeroot" build environment that allocates memory during - stat() (see http://bugs.debian.org/531522). It may not be - necessary any more since we're using access(), not stat(). But -- we'll leave the check, anyway. */ -+ we'll leave the check, anyway. -+ -+ This is also an issue when using Gentoo's version of 'fakeroot', -+ sandbox v2.5. Sandbox environments can also be detected fairly -+ easily by looking for SANDBOX_ON. -+ */ -+ - if (getenv("FAKEROOTKEY") != NULL || -- getenv("FAKED_MODE") != NULL) { -+ getenv("FAKED_MODE") != NULL || -+ getenv("SANDBOX_ON") != NULL ) { - return; - } - --- -1.8.1.5 - diff --git a/sys-cluster/openmpi/files/openmpi-ltdl.patch b/sys-cluster/openmpi/files/openmpi-ltdl.patch deleted file mode 100644 index a288ea272..000000000 --- a/sys-cluster/openmpi/files/openmpi-ltdl.patch +++ /dev/null @@ -1,78 +0,0 @@ -diff -up openmpi-1.6.3/ompi/debuggers/dlopen_test.c.ltdl openmpi-1.6.3/ompi/debuggers/dlopen_test.c ---- openmpi-1.6.3/ompi/debuggers/dlopen_test.c.ltdl 2012-04-03 08:30:25.000000000 -0600 -+++ openmpi-1.6.3/ompi/debuggers/dlopen_test.c 2012-11-02 14:50:12.613702426 -0600 -@@ -13,7 +13,17 @@ - #include <string.h> - #include <stdlib.h> - --#include "opal/libltdl/ltdl.h" -+#if OPAL_WANT_LIBLTDL -+ #ifndef __WINDOWS__ -+ #if OPAL_LIBLTDL_INTERNAL -+ #include "opal/libltdl/ltdl.h" -+ #else -+ #include "ltdl.h" -+ #endif -+ #else -+ #include "ltdl.h" -+ #endif -+#endif - - static int do_test(void); - -diff -up openmpi-1.6.3/ompi/debuggers/Makefile.am.ltdl openmpi-1.6.3/ompi/debuggers/Makefile.am ---- openmpi-1.6.3/ompi/debuggers/Makefile.am.ltdl 2012-04-03 08:30:25.000000000 -0600 -+++ openmpi-1.6.3/ompi/debuggers/Makefile.am 2012-11-02 15:04:53.636926260 -0600 -@@ -47,7 +47,7 @@ headers = \ - - dlopen_test_SOURCES = dlopen_test.c - dlopen_test_CPPFLAGS = -I$(top_srcdir)/opal/libltdl --dlopen_test_LDADD = $(top_builddir)/opal/libltdl/libltdlc.la -+dlopen_test_LDADD = $(LIBLTDL) - - predefined_gap_test_SOURCES = predefined_gap_test.c - predefined_gap_test_LDFLAGS = $(WRAPPER_EXTRA_LDFLAGS) -diff -up openmpi-1.6.3/test/support/components.c.ltdl openmpi-1.6.3/test/support/components.c ---- openmpi-1.6.3/test/support/components.c.ltdl 2012-04-03 08:29:44.000000000 -0600 -+++ openmpi-1.6.3/test/support/components.c 2012-11-02 14:50:29.204705380 -0600 -@@ -24,7 +24,17 @@ - - #include "opal/constants.h" - #include "opal/mca/mca.h" --#include "opal/libltdl/ltdl.h" -+#if OPAL_WANT_LIBLTDL -+ #ifndef __WINDOWS__ -+ #if OPAL_LIBLTDL_INTERNAL -+ #include "opal/libltdl/ltdl.h" -+ #else -+ #include "ltdl.h" -+ #endif -+ #else -+ #include "ltdl.h" -+ #endif -+#endif - - #include "components.h" - -diff -up openmpi-1.6.3/test/support/components.h.ltdl openmpi-1.6.3/test/support/components.h ---- openmpi-1.6.3/test/support/components.h.ltdl 2012-04-03 08:29:44.000000000 -0600 -+++ openmpi-1.6.3/test/support/components.h 2012-11-02 14:50:22.409703519 -0600 -@@ -20,7 +20,17 @@ - #ifndef OMPI_SUPPORT_COMPONENTS_H - #define OMPI_SUPPORT_COMPONENTS_H - --#include "opal/libltdl/ltdl.h" -+#if OPAL_WANT_LIBLTDL -+ #ifndef __WINDOWS__ -+ #if OPAL_LIBLTDL_INTERNAL -+ #include "opal/libltdl/ltdl.h" -+ #else -+ #include "ltdl.h" -+ #endif -+ #else -+ #include "ltdl.h" -+ #endif -+#endif - #include "opal/mca/mca.h" - - BEGIN_C_DECLS diff --git a/sys-cluster/openmpi/files/openmpi-r24328.patch b/sys-cluster/openmpi/files/openmpi-r24328.patch deleted file mode 100644 index bbd689d3a..000000000 --- a/sys-cluster/openmpi/files/openmpi-r24328.patch +++ /dev/null @@ -1,54 +0,0 @@ -From cf054cd92dfac55f3920e805d01c11dcfc2cd4fa Mon Sep 17 00:00:00 2001 -From: jsquyres <jsquyres@cisco.com> -Date: Mon, 28 Mar 2011 12:44:06 -0400 -Subject: [PATCH] Fix some fairly-important typos (!) - -Upstream commit r24328. ---- - test/datatype/ddt_lib.c | 2 +- - test/datatype/ddt_raw.c | 2 +- - test/datatype/opal_ddt_lib.c | 2 +- - 3 files changed, 3 insertions(+), 3 deletions(-) - -diff --git a/test/datatype/ddt_lib.c b/test/datatype/ddt_lib.c -index 015419d..c349384 100644 ---- a/test/datatype/ddt_lib.c -+++ b/test/datatype/ddt_lib.c -@@ -209,7 +209,7 @@ int mpich_typeub2( void ) - - int mpich_typeub3( void ) - { -- int blocklen[2], err = 0, idisp[3]; -+ int blocklen[3], err = 0, idisp[3]; - size_t sz; - MPI_Aint disp[3], lb, ub, ex; - ompi_datatype_t *types[3], *dt1, *dt2, *dt3, *dt4, *dt5; -diff --git a/test/datatype/ddt_raw.c b/test/datatype/ddt_raw.c -index eea9004..7effe65 100644 ---- a/test/datatype/ddt_raw.c -+++ b/test/datatype/ddt_raw.c -@@ -45,7 +45,7 @@ static int test_upper( unsigned int length ) - { - ompi_datatype_t *pdt; - opal_convertor_t * pConv; -- int rc; -+ int rc = OMPI_SUCCESS; - unsigned int i, iov_count, split_chunk, total_length; - size_t max_data; - struct iovec iov[5]; -diff --git a/test/datatype/opal_ddt_lib.c b/test/datatype/opal_ddt_lib.c -index e05bb06..dffd86c 100644 ---- a/test/datatype/opal_ddt_lib.c -+++ b/test/datatype/opal_ddt_lib.c -@@ -759,7 +759,7 @@ int mpich_typeub2( void ) - - int mpich_typeub3( void ) - { -- int blocklen[2], err = 0, idisp[3]; -+ int blocklen[3], err = 0, idisp[3]; - size_t sz; - OPAL_PTRDIFF_TYPE disp[3], lb, ub, ex; - opal_datatype_t *types[3], *dt1, *dt2, *dt3, *dt4, *dt5; --- -1.7.3.4 - |