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authorAisha Tammy <gentoo@aisha.cc>2020-09-27 15:30:24 +0000
committerAisha Tammy <gentoo@aisha.cc>2020-09-27 15:31:44 +0000
commit7c67d4f1945c5407327f63d6e422e63069e5611c (patch)
tree07aa3f219214122ff6dab09d936c06233a52f0b8 /sys-cluster/openmpi/files
parentsci-visualization/yt: bump python compat (diff)
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sys-cluster/{mpich{,2},mvapich,openmpi}: drop packages
present in ::gentoo Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
Diffstat (limited to 'sys-cluster/openmpi/files')
-rw-r--r--sys-cluster/openmpi/files/eselect.mpi.openmpi8
-rw-r--r--sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch42
-rw-r--r--sys-cluster/openmpi/files/openmpi-ltdl.patch78
-rw-r--r--sys-cluster/openmpi/files/openmpi-r24328.patch54
4 files changed, 0 insertions, 182 deletions
diff --git a/sys-cluster/openmpi/files/eselect.mpi.openmpi b/sys-cluster/openmpi/files/eselect.mpi.openmpi
deleted file mode 100644
index c1a9373f3..000000000
--- a/sys-cluster/openmpi/files/eselect.mpi.openmpi
+++ /dev/null
@@ -1,8 +0,0 @@
-MPI_CC=@ROOT@usr/bin/mpicc
-MPI_CXX=@ROOT@usr/bin/mpic++
-MPI_F77=@ROOT@usr/bin/mpif77
-MPI_FC=@ROOT@usr/bin/mpif90
-CLASS_BASE_MPI_IMP=@BASE_IMP@
-PATH=@ROOT@usr/bin
-MANPATH=@ROOT@usr/share/man
-LD_LIBRARY_PATH=@ROOT@usr/@LIBDIR@
diff --git a/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch b/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch
deleted file mode 100644
index 197430aee..000000000
--- a/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch
+++ /dev/null
@@ -1,42 +0,0 @@
-From 3bd5897c7ca8ab61fb024957aeae891e204b3e3f Mon Sep 17 00:00:00 2001
-From: Justin Bronder <jsbronder@gmail.com>
-Date: Mon, 1 Jul 2013 20:37:17 -0400
-Subject: [PATCH] hooks: disable malloc override inside of Gentoo sandbox
-
-As described in the comments in the source, Gentoo's own version of
-fakeroot, sandbox, also runs into hangs when malloc is overridden.
-Sandbox environments can easily be detected by looking for SANDBOX_PID
-in the environment. When detected, employ the same fix used for
-fakeroot.
-
-See https://bugs.gentoo.org/show_bug.cgi?id=462602
----
- opal/mca/memory/linux/hooks.c | 11 +++++++++--
- 1 file changed, 9 insertions(+), 2 deletions(-)
-
-diff --git a/opal/mca/memory/linux/hooks.c b/opal/mca/memory/linux/hooks.c
-index 6a1646f..5ded08c 100644
---- a/opal/mca/memory/linux/hooks.c
-+++ b/opal/mca/memory/linux/hooks.c
-@@ -747,9 +747,16 @@ static void opal_memory_linux_malloc_init_hook(void)
- "fakeroot" build environment that allocates memory during
- stat() (see http://bugs.debian.org/531522). It may not be
- necessary any more since we're using access(), not stat(). But
-- we'll leave the check, anyway. */
-+ we'll leave the check, anyway.
-+
-+ This is also an issue when using Gentoo's version of 'fakeroot',
-+ sandbox v2.5. Sandbox environments can also be detected fairly
-+ easily by looking for SANDBOX_ON.
-+ */
-+
- if (getenv("FAKEROOTKEY") != NULL ||
-- getenv("FAKED_MODE") != NULL) {
-+ getenv("FAKED_MODE") != NULL ||
-+ getenv("SANDBOX_ON") != NULL ) {
- return;
- }
-
---
-1.8.1.5
-
diff --git a/sys-cluster/openmpi/files/openmpi-ltdl.patch b/sys-cluster/openmpi/files/openmpi-ltdl.patch
deleted file mode 100644
index a288ea272..000000000
--- a/sys-cluster/openmpi/files/openmpi-ltdl.patch
+++ /dev/null
@@ -1,78 +0,0 @@
-diff -up openmpi-1.6.3/ompi/debuggers/dlopen_test.c.ltdl openmpi-1.6.3/ompi/debuggers/dlopen_test.c
---- openmpi-1.6.3/ompi/debuggers/dlopen_test.c.ltdl 2012-04-03 08:30:25.000000000 -0600
-+++ openmpi-1.6.3/ompi/debuggers/dlopen_test.c 2012-11-02 14:50:12.613702426 -0600
-@@ -13,7 +13,17 @@
- #include <string.h>
- #include <stdlib.h>
-
--#include "opal/libltdl/ltdl.h"
-+#if OPAL_WANT_LIBLTDL
-+ #ifndef __WINDOWS__
-+ #if OPAL_LIBLTDL_INTERNAL
-+ #include "opal/libltdl/ltdl.h"
-+ #else
-+ #include "ltdl.h"
-+ #endif
-+ #else
-+ #include "ltdl.h"
-+ #endif
-+#endif
-
- static int do_test(void);
-
-diff -up openmpi-1.6.3/ompi/debuggers/Makefile.am.ltdl openmpi-1.6.3/ompi/debuggers/Makefile.am
---- openmpi-1.6.3/ompi/debuggers/Makefile.am.ltdl 2012-04-03 08:30:25.000000000 -0600
-+++ openmpi-1.6.3/ompi/debuggers/Makefile.am 2012-11-02 15:04:53.636926260 -0600
-@@ -47,7 +47,7 @@ headers = \
-
- dlopen_test_SOURCES = dlopen_test.c
- dlopen_test_CPPFLAGS = -I$(top_srcdir)/opal/libltdl
--dlopen_test_LDADD = $(top_builddir)/opal/libltdl/libltdlc.la
-+dlopen_test_LDADD = $(LIBLTDL)
-
- predefined_gap_test_SOURCES = predefined_gap_test.c
- predefined_gap_test_LDFLAGS = $(WRAPPER_EXTRA_LDFLAGS)
-diff -up openmpi-1.6.3/test/support/components.c.ltdl openmpi-1.6.3/test/support/components.c
---- openmpi-1.6.3/test/support/components.c.ltdl 2012-04-03 08:29:44.000000000 -0600
-+++ openmpi-1.6.3/test/support/components.c 2012-11-02 14:50:29.204705380 -0600
-@@ -24,7 +24,17 @@
-
- #include "opal/constants.h"
- #include "opal/mca/mca.h"
--#include "opal/libltdl/ltdl.h"
-+#if OPAL_WANT_LIBLTDL
-+ #ifndef __WINDOWS__
-+ #if OPAL_LIBLTDL_INTERNAL
-+ #include "opal/libltdl/ltdl.h"
-+ #else
-+ #include "ltdl.h"
-+ #endif
-+ #else
-+ #include "ltdl.h"
-+ #endif
-+#endif
-
- #include "components.h"
-
-diff -up openmpi-1.6.3/test/support/components.h.ltdl openmpi-1.6.3/test/support/components.h
---- openmpi-1.6.3/test/support/components.h.ltdl 2012-04-03 08:29:44.000000000 -0600
-+++ openmpi-1.6.3/test/support/components.h 2012-11-02 14:50:22.409703519 -0600
-@@ -20,7 +20,17 @@
- #ifndef OMPI_SUPPORT_COMPONENTS_H
- #define OMPI_SUPPORT_COMPONENTS_H
-
--#include "opal/libltdl/ltdl.h"
-+#if OPAL_WANT_LIBLTDL
-+ #ifndef __WINDOWS__
-+ #if OPAL_LIBLTDL_INTERNAL
-+ #include "opal/libltdl/ltdl.h"
-+ #else
-+ #include "ltdl.h"
-+ #endif
-+ #else
-+ #include "ltdl.h"
-+ #endif
-+#endif
- #include "opal/mca/mca.h"
-
- BEGIN_C_DECLS
diff --git a/sys-cluster/openmpi/files/openmpi-r24328.patch b/sys-cluster/openmpi/files/openmpi-r24328.patch
deleted file mode 100644
index bbd689d3a..000000000
--- a/sys-cluster/openmpi/files/openmpi-r24328.patch
+++ /dev/null
@@ -1,54 +0,0 @@
-From cf054cd92dfac55f3920e805d01c11dcfc2cd4fa Mon Sep 17 00:00:00 2001
-From: jsquyres <jsquyres@cisco.com>
-Date: Mon, 28 Mar 2011 12:44:06 -0400
-Subject: [PATCH] Fix some fairly-important typos (!)
-
-Upstream commit r24328.
----
- test/datatype/ddt_lib.c | 2 +-
- test/datatype/ddt_raw.c | 2 +-
- test/datatype/opal_ddt_lib.c | 2 +-
- 3 files changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/test/datatype/ddt_lib.c b/test/datatype/ddt_lib.c
-index 015419d..c349384 100644
---- a/test/datatype/ddt_lib.c
-+++ b/test/datatype/ddt_lib.c
-@@ -209,7 +209,7 @@ int mpich_typeub2( void )
-
- int mpich_typeub3( void )
- {
-- int blocklen[2], err = 0, idisp[3];
-+ int blocklen[3], err = 0, idisp[3];
- size_t sz;
- MPI_Aint disp[3], lb, ub, ex;
- ompi_datatype_t *types[3], *dt1, *dt2, *dt3, *dt4, *dt5;
-diff --git a/test/datatype/ddt_raw.c b/test/datatype/ddt_raw.c
-index eea9004..7effe65 100644
---- a/test/datatype/ddt_raw.c
-+++ b/test/datatype/ddt_raw.c
-@@ -45,7 +45,7 @@ static int test_upper( unsigned int length )
- {
- ompi_datatype_t *pdt;
- opal_convertor_t * pConv;
-- int rc;
-+ int rc = OMPI_SUCCESS;
- unsigned int i, iov_count, split_chunk, total_length;
- size_t max_data;
- struct iovec iov[5];
-diff --git a/test/datatype/opal_ddt_lib.c b/test/datatype/opal_ddt_lib.c
-index e05bb06..dffd86c 100644
---- a/test/datatype/opal_ddt_lib.c
-+++ b/test/datatype/opal_ddt_lib.c
-@@ -759,7 +759,7 @@ int mpich_typeub2( void )
-
- int mpich_typeub3( void )
- {
-- int blocklen[2], err = 0, idisp[3];
-+ int blocklen[3], err = 0, idisp[3];
- size_t sz;
- OPAL_PTRDIFF_TYPE disp[3], lb, ub, ex;
- opal_datatype_t *types[3], *dt1, *dt2, *dt3, *dt4, *dt5;
---
-1.7.3.4
-