diff options
23 files changed, 357 insertions, 91 deletions
diff --git a/sci-chemistry/curvefit/ChangeLog b/sci-chemistry/curvefit/ChangeLog new file mode 100644 index 000000000..8f46e69a4 --- /dev/null +++ b/sci-chemistry/curvefit/ChangeLog @@ -0,0 +1,22 @@ +# ChangeLog for sci-chemistry/curvefit +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 14 Sep 2012; Justin Lecher <jlec@gentoo.org> curvefit-1.40.ebuild: + Quote sed correctly + + 14 Sep 2012; Justin Lecher <jlec@gentoo.org> curvefit-1.40.ebuild: + And it sits in EPREFIX + + 14 Sep 2012; Justin Lecher <jlec@gentoo.org> curvefit-1.40.ebuild: + We have ls in usr/bin + + 14 Sep 2012; Justin Lecher <jlec@gentoo.org> curvefit-1.40.ebuild: + Also include gcc-4.1 libdir in rpath + +*curvefit-1.40 (14 Sep 2012) + + 14 Sep 2012; Justin Lecher <jlec@gentoo.org> +curvefit-1.40.ebuild, + +metadata.xml: + New addition + diff --git a/sci-chemistry/curvefit/Manifest b/sci-chemistry/curvefit/Manifest new file mode 100644 index 000000000..e3af02270 --- /dev/null +++ b/sci-chemistry/curvefit/Manifest @@ -0,0 +1 @@ +DIST curvefit.linux.tar.gz 72480 SHA256 f0b1f8cc7e81e106b044719e42e653d6488c17ceb2048b14468a1a09a8bcc790 SHA512 657c4a08d2278cfbcfbe890ba7488187c9962d01ede4d79758f5e46559889152a2fad354226c000628025757a2d11cf1d8f2622dcead60683136ac2e45e93898 WHIRLPOOL fb1e512f65056c6937564e26151f20367e4c250e45197c9b19fb425ec7d1197bcd2a7a0629247d57b5ccf5de2aa60c531bfc2666e2d8d33ec5599567db09bff5 diff --git a/sci-chemistry/curvefit/curvefit-1.40.ebuild b/sci-chemistry/curvefit/curvefit-1.40.ebuild new file mode 100644 index 000000000..5429531ac --- /dev/null +++ b/sci-chemistry/curvefit/curvefit-1.40.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=4 + +inherit multilib + +DESCRIPTION="Linear and non-linear least squares fitting" +HOMEPAGE="http://cpmcnet.columbia.edu/dept/gsas/biochem/labs/palmer/software/curvefit.html" +SRC_URI="http://cpmcnet.columbia.edu/dept/gsas/biochem/labs/palmer/software/curvefit.linux.tar.gz" + +SLOT="0" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples" + +RDEPEND=" + sci-libs/blas-reference + sys-devel/gcc:4.1" +DEPEND="dev-util/patchelf" + +S="${WORKDIR}"/linux + +QA_PREBUILT="opt/bin/.*" + +src_install() { + local _exe + sed \ + -e 's: xmgr : xmgrace :g' \ + -e "s: /bin/ls:${EPREFIX}/bin/ls:g" \ + -i batch_curve curveplot || die + + exeinto /opt/bin + if use x86; then + _exe=./linux_32/curvefit + elif use amd64; then + _exe=./linux_64/curvefit + fi + + patchelf --set-rpath "${EPREFIX}/opt/${PN}:${EPREFIX}/usr/$(get_libdir)/gcc/x86_64-pc-linux-gnu/4.1.2/" ${_exe} + + doexe batch_curve curveplot ${_exe} + + dosym ../../usr/$(get_libdir)/libblas.so /opt/${PN}/libblas.so.3 + + dodoc Versions + dohtml curvefit_manual.html + + if use examples; then + insinto /usr/share/${PN}/examples/ + doins sample* + fi +} diff --git a/sci-chemistry/curvefit/metadata.xml b/sci-chemistry/curvefit/metadata.xml new file mode 100644 index 000000000..d369d068f --- /dev/null +++ b/sci-chemistry/curvefit/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci</herd> +</pkgmetadata> diff --git a/sci-libs/iml/ChangeLog b/sci-libs/iml/ChangeLog index 7310d1e95..8bee9988f 100644 --- a/sci-libs/iml/ChangeLog +++ b/sci-libs/iml/ChangeLog @@ -1,7 +1,17 @@ # ChangeLog for sci-libs/iml -# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*iml-1.0.3-r2 (13 Sep 2012) + + 13 Sep 2012; François Bissey <francois.bissey@canterbury.ac.nz> + -iml-1.0.3.ebuild, +iml-1.0.3-r2.ebuild, -files/iml-1.0.3-cblas.patch, + +files/iml-1.0.3-fix-undefined-symbol.patch, + +files/iml-1.0.3-repl_removal.patch, + +files/iml-1.0.3-use-any-cblas-implementation.patch, + -files/fix-undefined-symbol.patch: + bring to s-o-g level + *iml-1.0.3 (23 Nov 2009) 23 Nov 2009; François Bissey <f.r.bissey@massey.ac.nz> +iml-1.0.3.ebuild, diff --git a/sci-libs/iml/Manifest b/sci-libs/iml/Manifest index 4cedfb6be..2f658aa1e 100644 --- a/sci-libs/iml/Manifest +++ b/sci-libs/iml/Manifest @@ -1 +1 @@ -DIST iml-1.0.3.tar.gz 395160 RMD160 6b845c476158ab977226a69fd8baa3e95bf8d3a8 SHA1 3783e6e0c5aacd0113f30eb731d12de981de6a5e SHA256 fc626debbf8f84689398f4b941a6c1ded0910eea4388e169bf63c48e257b0395 +DIST iml-1.0.3.tar.gz 395160 SHA256 fc626debbf8f84689398f4b941a6c1ded0910eea4388e169bf63c48e257b0395 SHA512 92e76a7c08ca6e425153d8c614783064a80077ad9859e1c1460595b5e29e614c6eaf8b330a5f3c1b564209ca8265f93d8485cd5cb376e96f01dc81bf9751a67a WHIRLPOOL c0b65d570513ee74d1659863005f2922f9e91e423ef5c701b665912a3d1fa9c5c389a9d97a0eabbed3334ac0111e815b37a69748a50326a6100903c5ac521722 diff --git a/sci-libs/iml/files/iml-1.0.3-cblas.patch b/sci-libs/iml/files/iml-1.0.3-cblas.patch deleted file mode 100644 index c9a6a1faa..000000000 --- a/sci-libs/iml/files/iml-1.0.3-cblas.patch +++ /dev/null @@ -1,41 +0,0 @@ ---- configure.ac.orig 2009-11-23 09:30:12.000000000 +1300 -+++ configure.ac 2009-11-23 11:35:59.000000000 +1300 -@@ -3,6 +3,7 @@ - AC_PREREQ(2.59) - AC_INIT(IML, 1.0.3) - AC_CONFIG_AUX_DIR(config) -+AC_CONFIG_MACRO_DIR(config) - AM_CONFIG_HEADER(config.h:config-h.in) - AC_CONFIG_SRCDIR([src/RNSop.c]) - AM_INIT_AUTOMAKE -@@ -55,11 +56,18 @@ - respectively when running configure. - )]) - --IML_CHECK_ATLAS(,,[AC_MSG_ERROR( --ATLAS not found! --ATLAS version 3.0 or greater is required for this library to compile. Please make sure ATLAS is installed and specify the header and libraries location with the options --with-atlas-include=<path> and --with-atlas-lib=<path> respectively when running configure. --)]) -+AC_CHECK_HEADERS([cblas.h], -+ [cblas_headers_found=yes; break;]) -+ -+AS_IF([test "x$cblas_headers_found" != "xyes"], -+ [AC_MSG_ERROR([Unable to find the cblas headers check your installation])]) -+ -+AC_ARG_WITH(cblas-lib, -+ AC_HELP_STRING([--with-cblas-lib=<lib>],[Specify the flags for cblas.]), -+ with_cblas_lib=$withval) -+ATLAS_LIBS="$with_cblas_lib" - -+AC_SUBST(ATLAS_LIBS) - AC_SUBST(LDFLAGS) - AC_SUBST(ac_aux_dir) - ---- Makefile.am~ 2009-11-23 11:38:44.000000000 +1300 -+++ Makefile.am 2009-11-23 11:38:44.000000000 +1300 -@@ -1,3 +1,5 @@ -+ACLOCAL_AMFLAGS = -I config -+ - EXTRA_DIST = bootstrap - - SUBDIRS = repl config src doc tests examples diff --git a/sci-libs/iml/files/fix-undefined-symbol.patch b/sci-libs/iml/files/iml-1.0.3-fix-undefined-symbol.patch index 1521d1536..53b14250b 100644 --- a/sci-libs/iml/files/fix-undefined-symbol.patch +++ b/sci-libs/iml/files/iml-1.0.3-fix-undefined-symbol.patch @@ -1,11 +1,11 @@ ---- nullspace.c.orig 2008-08-12 15:17:18.000000000 +0200 -+++ nullspace.c 2008-08-12 15:12:15.000000000 +0200 +--- src/nullspace.c.orig 2009-11-23 15:01:49.200283384 +0000 ++++ src/nullspace.c 2009-11-23 15:03:00.862295995 +0000 @@ -253,7 +253,7 @@ for (i = 0; i < m; i++) { for (j = 0; j < m; j++) mpz_init_set_ui(mp_N[i * m + j], 0); - mpz_init_ui(mp_N[i * m + i], 1); -+ mpz_init_set_ui(mp_N[i * m + i], 1); ++ mpz_set_ui(mp_N[i * m + i], 1); } *mp_N_pass = mp_N; } else { /* r>0 and s>0 */ diff --git a/sci-libs/iml/files/iml-1.0.3-repl_removal.patch b/sci-libs/iml/files/iml-1.0.3-repl_removal.patch new file mode 100644 index 000000000..0be719b87 --- /dev/null +++ b/sci-libs/iml/files/iml-1.0.3-repl_removal.patch @@ -0,0 +1,27 @@ +--- configure.ac.orig 2011-01-13 22:39:44.640530988 +1300 ++++ configure.ac 2011-01-13 22:40:15.462530988 +1300 +@@ -63,7 +63,6 @@ + AC_OUTPUT([ + Makefile + config/Makefile +- repl/Makefile + src/Makefile + doc/Makefile + examples/Makefile +--- Makefile.am.orig 2011-01-13 22:40:32.171530988 +1300 ++++ Makefile.am 2011-01-13 22:41:39.874530988 +1300 +@@ -1,3 +1,3 @@ + EXTRA_DIST = bootstrap + +-SUBDIRS = repl config src doc tests examples ++SUBDIRS = config src doc tests examples +--- src/Makefile.am.orig 2011-01-13 22:41:53.012530988 +1300 ++++ src/Makefile.am 2011-01-13 22:42:12.585530988 +1300 +@@ -30,6 +30,5 @@ + nullspace.c + + libiml_la_CFLAGS = $(AM_CFLAGS) +-libiml_la_LIBADD = $(EXTERNLIB) \ +- $(top_builddir)/repl/librepl.la ++libiml_la_LIBADD = $(EXTERNLIB) + libiml_la_LDFLAGS = -version-info 1:0:1 diff --git a/sci-libs/iml/files/iml-1.0.3-use-any-cblas-implementation.patch b/sci-libs/iml/files/iml-1.0.3-use-any-cblas-implementation.patch new file mode 100644 index 000000000..c1dd09c88 --- /dev/null +++ b/sci-libs/iml/files/iml-1.0.3-use-any-cblas-implementation.patch @@ -0,0 +1,14 @@ +--- configure.ac.orig 2008-06-15 23:51:30.000000000 +0000 ++++ configure.ac 2010-08-07 08:38:44.689081000 +0000 +@@ -55,10 +55,7 @@ + respectively when running configure. + )]) + +-IML_CHECK_ATLAS(,,[AC_MSG_ERROR( +-ATLAS not found! +-ATLAS version 3.0 or greater is required for this library to compile. Please make sure ATLAS is installed and specify the header and libraries location with the options --with-atlas-include=<path> and --with-atlas-lib=<path> respectively when running configure. +-)]) ++PKG_CHECK_MODULES([ATLAS], [cblas]) + + AC_SUBST(LDFLAGS) + AC_SUBST(ac_aux_dir) diff --git a/sci-libs/iml/iml-1.0.3-r2.ebuild b/sci-libs/iml/iml-1.0.3-r2.ebuild new file mode 100644 index 000000000..df8342c04 --- /dev/null +++ b/sci-libs/iml/iml-1.0.3-r2.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI="4" + +inherit autotools-utils + +DESCRIPTION="Integer Matrix Library" +HOMEPAGE="http://www.cs.uwaterloo.ca/~astorjoh/iml.html" +SRC_URI="http://www.cs.uwaterloo.ca/~astorjoh/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="static-libs" + +RESTRICT="mirror" + +DEPEND="virtual/cblas" +RDEPEND="${DEPEND}" + +AUTOTOOLS_AUTORECONF=yes +AT_M4DIR="config" +DOCS=( AUTHORS ChangeLog README ) +PATCHES=( + "${FILESDIR}"/${P}-use-any-cblas-implementation.patch + "${FILESDIR}"/${P}-fix-undefined-symbol.patch + "${FILESDIR}"/${P}-repl_removal.patch +) + +src_configure() { + myeconfargs=( + --with-default="${EPREFIX}"/usr + ) + autotools-utils_src_configure +} diff --git a/sci-libs/iml/iml-1.0.3.ebuild b/sci-libs/iml/iml-1.0.3.ebuild deleted file mode 100644 index 92eab3436..000000000 --- a/sci-libs/iml/iml-1.0.3.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI=2 - -inherit autotools eutils - -DESCRIPTION="Integer Matrix Library" -HOMEPAGE="http://www.cs.uwaterloo.ca/~astorjoh/iml.html" -SRC_URI="http://www.cs.uwaterloo.ca/~astorjoh/${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -RESTRICT="mirror" -IUSE="" - -DEPEND="dev-util/pkgconfig - dev-libs/gmp - virtual/cblas" -RDEPEND="dev-libs/gmp - virtual/cblas" - -src_prepare() { - # do not need atlas specifically any cblas will do... - epatch "${FILESDIR}/${P}-cblas.patch" - # apply patch supplied by debian bugreport #494819 - epatch "${FILESDIR}/fix-undefined-symbol.patch" - eautoreconf -} - -src_configure() { - econf \ - --enable-shared \ - --with-cblas-lib="$(pkg-config cblas --libs)" \ - || die "econf failed" -} - -src_install() { - emake DESTDIR="${D}" install || die "emake install failed" - dodoc ChangeLog README -} diff --git a/sci-physics/LoopTools/ChangeLog b/sci-physics/LoopTools/ChangeLog index 8ea8e6b0e..b8c7f9e32 100644 --- a/sci-physics/LoopTools/ChangeLog +++ b/sci-physics/LoopTools/ChangeLog @@ -2,6 +2,13 @@ # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*LoopTools-2.8 (12 Sep 2012) + + 12 Sep 2012; Jauhien Piatlicki (jauhien) <piatlicki@gmail.com> + -LoopTools-2.7-r1.ebuild, -files/LoopTools-2.7-makefile.patch, + +LoopTools-2.8.ebuild, +files/LoopTools-2.8-makefile.patch: + version bump + *LoopTools-2.7-r1 (28 Aug 2012) 28 Aug 2012; Jauhien Piatlicki (jauhien) <piatlicki@gmail.com> diff --git a/sci-physics/LoopTools/LoopTools-2.7-r1.ebuild b/sci-physics/LoopTools/LoopTools-2.8.ebuild index 76182c1fb..76182c1fb 100644 --- a/sci-physics/LoopTools/LoopTools-2.7-r1.ebuild +++ b/sci-physics/LoopTools/LoopTools-2.8.ebuild diff --git a/sci-physics/LoopTools/Manifest b/sci-physics/LoopTools/Manifest index 2ebf749af..9da4f8349 100644 --- a/sci-physics/LoopTools/Manifest +++ b/sci-physics/LoopTools/Manifest @@ -1 +1 @@ -DIST LoopTools-2.7.tar.gz 523999 SHA256 23d7a92232e3757394c3e10d50c3966d06afa68d87b157b2a521c97f12daac9e SHA512 6bee45ca0aac88c81b42bb622cd0cf00c0c9498d5952a7d568703e165a27981f7d93415e48b891d8cd4126db9f18f832248f0b63d6d74e5100b694697d56fb78 WHIRLPOOL b347b2c3518935515208bddf07b81497788defc30fa1c80fa3a8ceb550e39363e69bb91fd3954e768db7ea908f21249802297f9dc207c60aab5f5c4e6f6db21c +DIST LoopTools-2.8.tar.gz 545221 SHA256 364bea8ac9aa5a9ad2aea7686a885d09fbe1c1a6ded9ba33b6781e063fa9ee4e SHA512 e50ec398229e2d8c0d7d4d0ef6bf523798145714ad6acbb9e018a40301e3ccc968d833eb20de4e4fb44e372de5f1abb9a9ebfc6e63d05339470cfb9143c72aa4 WHIRLPOOL 55cdf6f4aba6347b851576b9efd5e879d0fd4df70ef6c46d4c3d4b6b1ce20cb572c4d32f4afde792a8d411f862b871bc8fe1948dcdf3931ffd47b6bd15cd0116 diff --git a/sci-physics/LoopTools/files/LoopTools-2.7-makefile.patch b/sci-physics/LoopTools/files/LoopTools-2.8-makefile.patch index 10df86d5a..10df86d5a 100644 --- a/sci-physics/LoopTools/files/LoopTools-2.7-makefile.patch +++ b/sci-physics/LoopTools/files/LoopTools-2.8-makefile.patch diff --git a/sci-physics/thepeg/ChangeLog b/sci-physics/thepeg/ChangeLog new file mode 100644 index 000000000..35a5eb321 --- /dev/null +++ b/sci-physics/thepeg/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-physics/thepeg +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*thepeg-1.8.0 (07 Sep 2012) + + 07 Sep 2012; Jauhien Piatlicki (jauhien) <piatlicki@gmail.com> + +thepeg-1.8.0.ebuild, +files/thepeg-1.8.0-java.patch, +metadata.xml: + New Ebuild for bug #424003 thanks to hasufell, mgorny and xarthisius. + diff --git a/sci-physics/thepeg/Manifest b/sci-physics/thepeg/Manifest new file mode 100644 index 000000000..5f93a1391 --- /dev/null +++ b/sci-physics/thepeg/Manifest @@ -0,0 +1,5 @@ +DIST GRV98nlo.LHgrid 221906 SHA256 dca2cd4f13c6e9750da3cb1a1260c1db2e6b9ede9988f92f85e20524df0fe1d0 SHA512 ff615ab723d1f5ed8bd0187031fae441d41d6152938fd7d72d11fcfa7ffbee40704d2341e6d922432ae1f9fb5563210a9010d9466dda5c4f80c301bc4b563cd1 WHIRLPOOL be92c2c0fe0152dfff6c7aea9a937af42b553bde5fbe387774520805a0fa8601698e4545cb8dea70f7ccfb96306f8086545bca600f9bf02417dcf17518b5451a +DIST MRST2001nlo.LHgrid 719690 SHA256 2f925ac31f458b81cfeb2291961ec5ef8dba30f543b0e758c1fb2bd41bde6139 SHA512 d477bcc678a17ed6ba8e13c5b9b009c2f1c7632793ca69320cf6e132ecac315521b9cdc2da9bd7cadc94f4e6218d2d41f9ae2e77c1c9a3a5d13770ef9fe7124d WHIRLPOOL 711f0e353d2b68e5c6ed4a42756b17b63289b5b9890cd3b07fa9766748556e8bd2aedbd33b59840347e351176f098bd710d590849e76b237709655bb6bf8d370 +DIST ThePEG-1.8.0.tar.bz2 1085822 SHA256 4b22fda1078f410b999a23a17f611c9ae3a7f0f4cee4e83dc82c9336b7adf037 SHA512 34a0aae5450b8d8668fbcd786ddb3add63f827d075206abab876db2f3a4a22e0c8cb7bbe3a826180bab2f36db2ffec54e8dafdefe41bcb47d4b16b1f4f8c298a WHIRLPOOL 907c93f157759988ea30c23554505b98a0891c246e62a227dfb23eca2d5e16fa3e83dbc0486ca634d35eba9a48e5a500a6ca78df69a6120d7ce860ba9bc01cb2 +DIST cteq5l.LHgrid 134797 SHA256 83c92bc90fd6e12be9cd76bc032eca26dcedbe90f0c11aef843bbf54734d5bba SHA512 1ba41fd773104a933af6f37745dcb6f8422e1aece74ba2b1e15a5fb69fdaf694336c0ec1dc6fbc964d2cf3fe363d17ca0c01a6c2ba6def0afa4389cb4083f34b WHIRLPOOL 8a86877fcbae2b45576e3fae08dfd4771c668257893ba2f813c578641dce9800f42bfd57d0d8ac2abc6bf7cd40921020478f1912014a36cfb722ed408ca1430f +DIST cteq6ll.LHpdf 1461 SHA256 a3c6bd1ebea30f75fa23fa94922ba281872a66e59465b61f73a0f3629c2b5c03 SHA512 b89a87d1c1c7cc910aa4af53abc3cc6550670a5a6332989232d33c7da1ba01ce49bbbf9f3bb454e673312fb5bc1679f86eea18f95a1443d1c80d3a622e2b8728 WHIRLPOOL 3eeba4277668b92bfa0de3d0fb27d0d9b940904061b6aa212936e4a9b86f9955188b81d9572672f64155abc7f2c6184fc90f8f81dd7eabbe1b015b749a5af304 diff --git a/sci-physics/thepeg/files/thepeg-1.8.0-java.patch b/sci-physics/thepeg/files/thepeg-1.8.0-java.patch new file mode 100644 index 000000000..45b0e9559 --- /dev/null +++ b/sci-physics/thepeg/files/thepeg-1.8.0-java.patch @@ -0,0 +1,37 @@ +--- java/Makefile.am ++++ java/Makefile.am +@@ -11,8 +12,7 @@ + + CLEANFILES = ThePEG.jar thepeg.sh + +-jardir = $(pkglibdir) +-nodist_jar_DATA = ThePEG.jar ++noinst_DATA = ThePEG.jar + + dist_noinst_DATA = $(JAVASOURCES) jar-manifest + +@@ -34,7 +34,7 @@ + $(JAR) cmf ThePEG/jar-manifest ThePEG.jar ThePEG/*.class + + thepeg.sh: thepeg.install Makefile +- sed -e s:@pkglibdir[@]:$(pkglibdir):g \ ++ sed -e s:@datadir[@]:$(datadir):g \ + -e s:@bindir[@]:$(bindir):g \ + -e s:@java[@]:$(JAVA):g $(srcdir)/thepeg.install > thepeg.sh + chmod +x thepeg.sh +--- java/thepeg.install ++++ java/thepeg.install +@@ -1,6 +1,6 @@ + #!/bin/sh + +-pkglibdir=@pkglibdir@ ++source @datadir@/thepeg/package.env + bindir=@bindir@ + + ThePEG_CMD="${bindir}/setupThePEG" +@@ -19,4 +19,4 @@ + + + +-exec @java@ ${HEADLESS} -jar ${pkglibdir}/ThePEG.jar ${ThePEG_CMD} "$@" ++exec @java@ ${HEADLESS} -jar ${CLASSPATH} ${ThePEG_CMD} "$@" diff --git a/sci-physics/thepeg/metadata.xml b/sci-physics/thepeg/metadata.xml new file mode 100644 index 000000000..1bffb2a93 --- /dev/null +++ b/sci-physics/thepeg/metadata.xml @@ -0,0 +1,20 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci</herd> +<maintainer> + <email>piatlicki@gmail.com</email> +</maintainer> +<longdescription> + Toolkit for High Energy Physics Event Generation. + ThePEG has been broken out from the PYTHIA7 program + to better factorize the parts which were PYTHIA-specific + from those which are general model-independent components + of the toolkit and which can be used by any event generator model. +</longdescription> +<use> + <flag name='hepmc'>Adds support for High Energy Physics Monte Carlo + Generators <pkg>sci-physics/hepmc</pkg></flag> + <flag name='lhapdf'>Adds support for <pkg>sci-physics/lhapdf</pkg></flag> +</use> +</pkgmetadata> diff --git a/sci-physics/thepeg/thepeg-1.8.0.ebuild b/sci-physics/thepeg/thepeg-1.8.0.ebuild new file mode 100644 index 000000000..abddbcd4f --- /dev/null +++ b/sci-physics/thepeg/thepeg-1.8.0.ebuild @@ -0,0 +1,92 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=4 + +inherit autotools elisp-common eutils java-pkg-opt-2 + +MYP=ThePEG-${PV} + +DESCRIPTION="Toolkit for High Energy Physics Event Generation" +HOMEPAGE="http://home.thep.lu.se/ThePEG/" +SRC_URI="http://www.hepforge.org/archive/thepeg/${MYP}.tar.bz2 + test? ( hepmc? ( + http://www.hepforge.org/archive/lhapdf/pdfsets/current/cteq6ll.LHpdf + http://www.hepforge.org/archive/lhapdf/pdfsets/current/cteq5l.LHgrid + http://www.hepforge.org/archive/lhapdf/pdfsets/current/GRV98nlo.LHgrid + http://www.hepforge.org/archive/lhapdf/pdfsets/current/MRST2001nlo.LHgrid ) )" +LICENSE="GPL-2" + +SLOT="0" +KEYWORDS="~x86" +IUSE="emacs hepmc java lhapdf test zlib" + +RDEPEND="sci-libs/gsl + dev-lang/perl + emacs? ( virtual/emacs ) + hepmc? ( sci-physics/hepmc ) + java? ( >=virtual/jre-1.5 ) + lhapdf? ( sci-physics/lhapdf ) + zlib? ( sys-libs/zlib ) +" +DEPEND="${RDEPEND} + test? ( sys-process/time )" + +S="${WORKDIR}/${MYP}" + +pkg_setup() { + elog "There is an extra option on package Rivet not yet in Gentoo:" + elog "You can use the env variable EXTRA_ECONF variable for this:" + elog "EXTRA_ECONF=\"--with-rivet=DIR\"" + elog "where DIR - location of Rivet installation" + java-pkg-opt-2_pkg_setup +} + +src_prepare() { + find -name 'Makefile.am' -exec sed -i '1ipkgdatadir=$(datadir)/thepeg' {} \; \ + || die "changing pkgdatadir name failed" + sed -i '/dist_pkgdata_DATA = ThePEG.el/d' lib/Makefile.am \ + || die "preventing install ThePEG.el in pkgdatadir failed" + epatch "${FILESDIR}"/${P}-java.patch + eautoreconf + + java-pkg-opt-2_src_prepare +} + +src_configure() { + econf \ + --disable-silent-rules \ + $(use_with hepmc hepmc "${EPREFIX}"/usr) \ + $(use_with java javagui) \ + $(use_with lhapdf LHAPDF "${EPREFIX}"/usr) \ + $(use_with zlib zlib "${EPREFIX}"/usr) +} + +src_compile() { + emake + if use emacs; then + elisp-compile lib/ThePEG.el || die + fi +} + +src_test() { + emake LHAPATH="${DISTDIR}" check +} + +src_install() { + emake DESTDIR="${D}" install + if use emacs; then + elisp-install ${PN} lib/ThePEG.el lib/ThePEG.elc || die + fi + use java && java-pkg_newjar java/ThePEG.jar +} + +pkg_postinst() { + if use emacs; then + elog "To use installed elisp file you should add" + elog "(add-to-list 'load-path \"${SITELISP}/${PN}\")" + elog "(load \"ThePEG\")" + elog "to your .emacs file" + fi +} diff --git a/sci-visualization/paraview/ChangeLog b/sci-visualization/paraview/ChangeLog index 67889a1d4..703030192 100644 --- a/sci-visualization/paraview/ChangeLog +++ b/sci-visualization/paraview/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*paraview-3.14.1-r3 (16 Sep 2012) + + 16 Sep 2012; François Bissey <francois.bissey@canterbury.ac.nz> + -paraview-3.14.1-r2.ebuild, +paraview-3.14.1-r3.ebuild: + add a ps useflags for gl2ps + *paraview-3.14.1-r2 (31 Aug 2012) 31 Aug 2012; François Bissey <francois.bissey@canterbury.ac.nz> diff --git a/sci-visualization/paraview/paraview-3.14.1-r2.ebuild b/sci-visualization/paraview/paraview-3.14.1-r3.ebuild index 30bbe3333..5eb288da8 100644 --- a/sci-visualization/paraview/paraview-3.14.1-r2.ebuild +++ b/sci-visualization/paraview/paraview-3.14.1-r3.ebuild @@ -20,7 +20,7 @@ RESTRICT="mirror" LICENSE="paraview GPL-2" KEYWORDS="~x86 ~amd64" SLOT="0" -IUSE="boost cg -coprocessing doc examples +gui mpi mysql nvcontrol +plugins +python webkit ffmpeg theora" +IUSE="boost cg -coprocessing doc examples +gui mpi mysql postscript nvcontrol +plugins +python webkit ffmpeg theora" RDEPEND=" ~sci-libs/netcdf-4.1.3[cxx,hdf5] @@ -45,6 +45,7 @@ RDEPEND=" ) ffmpeg? ( virtual/ffmpeg ) theora? ( media-libs/libtheora ) + postscript? ( x11-libs/gl2ps ) dev-libs/libxml2:2 dev-db/sqlite:3 media-libs/libpng @@ -160,6 +161,8 @@ src_configure() { $(cmake-utils_use nvcontrol VTK_USE_NVCONTROL) $(cmake-utils_use mysql XDMF_USE_MYSQL) $(cmake-utils_use mysql VTK_USE_MYSQL) + $(cmake-utils_use postscript VTK_USE_GL2PS) + $(cmake-utils_use postscript VTK_USE_SYSTEM_GL2PS) $(cmake-utils_use coprocessing PARAVIEW_ENABLE_COPROCESSING) $(cmake-utils_use ffmpeg VTK_USE_FFMPEG_ENCODER) $(cmake-utils_use theora VTK_USE_THEORA_ENCODER) |