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Diffstat (limited to 'sci-biology/Trinotate/Trinotate-3.2.1.ebuild')
| -rw-r--r-- | sci-biology/Trinotate/Trinotate-3.2.1.ebuild | 44 |
1 files changed, 0 insertions, 44 deletions
diff --git a/sci-biology/Trinotate/Trinotate-3.2.1.ebuild b/sci-biology/Trinotate/Trinotate-3.2.1.ebuild deleted file mode 100644 index 1af77dccd..000000000 --- a/sci-biology/Trinotate/Trinotate-3.2.1.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit perl-module toolchain-funcs - -DESCRIPTION="Annotation and analysis pipeline for de novo assembled transcriptomes" -HOMEPAGE="https://github.com/Trinotate/Trinotate.github.io/wiki" -SRC_URI="https://github.com/Trinotate/Trinotate/archive/${PN}-v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD-BroadInstitute" -SLOT="0" -KEYWORDS="" - -DEPEND="" -RDEPEND="${DEPEND} - sci-biology/ncbi-tools++ - sci-biology/trinityrnaseq - sci-biology/TransDecoder -" - -# http://www.cbs.dtu.dk/cgi-bin/sw_request?rnammer -# >=sci-biology/rnammer-2.3.2 -# -# http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?signalp -# >=sci-biology/signalp-4 -# -# http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?tmhmm - -# We suggest you rename this version of hmmsearch from hmmer-2 package to 'hmmsearch2'. -# In the 'rnammer' software configuration, edit the rnammer script to point -# $HMMSEARCH_BINARY = "/path/to/hmmsearch2"; - -S="${WORKDIR}/${PN}-${PN}-v${PV}" - -src_install(){ - perl_set_version - dobin Trinotate - insinto /usr/share/"${PN}" - doins -r admin sample_data util TrinotateWeb - perl_domodule -r PerlLib/* - dodoc notes README.md README.txt Changelog.txt -} |