diff options
Diffstat (limited to 'sci-biology/Trinotate')
-rw-r--r-- | sci-biology/Trinotate/Manifest | 1 | ||||
-rw-r--r-- | sci-biology/Trinotate/Trinotate-3.2.1.ebuild | 44 | ||||
-rw-r--r-- | sci-biology/Trinotate/metadata.xml | 15 |
3 files changed, 0 insertions, 60 deletions
diff --git a/sci-biology/Trinotate/Manifest b/sci-biology/Trinotate/Manifest deleted file mode 100644 index 30ecd61fa..000000000 --- a/sci-biology/Trinotate/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST Trinotate-3.2.1.tar.gz 29794455 BLAKE2B b630b4750540aeefaed598d34038ebc4bf0147f998d9a45038759b1f02cd210835b88cdc7e8e5b8e194ade05b410f8e76ea562c09dcbf09bfa56cfffafa207c3 SHA512 0c2c5021156651644cfcec09bdd19f45c4dd5ab5dd63effbacca3ffc13a32ff3b2050d8fe860e4302ade142f350c895303925542aa730c16abe0721654f8cad7 diff --git a/sci-biology/Trinotate/Trinotate-3.2.1.ebuild b/sci-biology/Trinotate/Trinotate-3.2.1.ebuild deleted file mode 100644 index 1af77dccd..000000000 --- a/sci-biology/Trinotate/Trinotate-3.2.1.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit perl-module toolchain-funcs - -DESCRIPTION="Annotation and analysis pipeline for de novo assembled transcriptomes" -HOMEPAGE="https://github.com/Trinotate/Trinotate.github.io/wiki" -SRC_URI="https://github.com/Trinotate/Trinotate/archive/${PN}-v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD-BroadInstitute" -SLOT="0" -KEYWORDS="" - -DEPEND="" -RDEPEND="${DEPEND} - sci-biology/ncbi-tools++ - sci-biology/trinityrnaseq - sci-biology/TransDecoder -" - -# http://www.cbs.dtu.dk/cgi-bin/sw_request?rnammer -# >=sci-biology/rnammer-2.3.2 -# -# http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?signalp -# >=sci-biology/signalp-4 -# -# http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?tmhmm - -# We suggest you rename this version of hmmsearch from hmmer-2 package to 'hmmsearch2'. -# In the 'rnammer' software configuration, edit the rnammer script to point -# $HMMSEARCH_BINARY = "/path/to/hmmsearch2"; - -S="${WORKDIR}/${PN}-${PN}-v${PV}" - -src_install(){ - perl_set_version - dobin Trinotate - insinto /usr/share/"${PN}" - doins -r admin sample_data util TrinotateWeb - perl_domodule -r PerlLib/* - dodoc notes README.md README.txt Changelog.txt -} diff --git a/sci-biology/Trinotate/metadata.xml b/sci-biology/Trinotate/metadata.xml deleted file mode 100644 index eaf731f09..000000000 --- a/sci-biology/Trinotate/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">Trinotate/Trinotate</remote-id> - </upstream> -</pkgmetadata> |