diff options
Diffstat (limited to 'sci-biology/arachne')
| -rw-r--r-- | sci-biology/arachne/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/arachne/arachne-46233.ebuild | 39 | ||||
| -rw-r--r-- | sci-biology/arachne/metadata.xml | 12 |
3 files changed, 0 insertions, 52 deletions
diff --git a/sci-biology/arachne/Manifest b/sci-biology/arachne/Manifest deleted file mode 100644 index c70683996..000000000 --- a/sci-biology/arachne/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST arachne-46233.tar.gz 5161566 BLAKE2B dc9381fae80477e4a2439e24cbcf9bc462c7a4effb06c26a9f74ad1740f86a96273c3dae142d0065aad08d6340e9508528c35ee6914a8405b66327bfc4ec89da SHA512 4ab293e7f4477dd6aeba7c6bc1a78d168cbb811d7f67cbcbc1eea094a7b6bd180bdde6fb1b7c8256ff473dba3d748a43bd426d971575f1c0793289a0b200dc2b diff --git a/sci-biology/arachne/arachne-46233.ebuild b/sci-biology/arachne/arachne-46233.ebuild deleted file mode 100644 index b34d00134..000000000 --- a/sci-biology/arachne/arachne-46233.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Whole genome shotgun OLC assembler for Sanger reads (overlap-layout-contig)" -HOMEPAGE="https://genome.cshlp.org/content/12/1/177.abstract" -SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ARACHNE/latest_source_code/${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="" -IUSE="doc openmp" - -DEPEND="dev-libs/xerces-c - doc? ( virtual/latex-base app-text/dvipsk )" -RDEPEND="${DEPEND}" - -# needs >=g++-4.7 but does not compile with 5.3.0 - -# --disable-openmp to disable requirement for OpenMP-capable compiler -src_configure() { - local myconf=() - use openmp || myconf+=( --disable-openmp ) - econf ${myconf[@]} -} - -# set the following environment variables -# http://www.broadinstitute.org/crd/wiki/index.php/Setup -# -# ARACHNE_PRE -# ARACHNE_BIN_DIR -# ARACHNE_PRETTY_HELP - -pkg_postinst(){ - einfo "Please add these to your ~/.bashrc" - einfo "limit stacksize 100000" - einfo "limit datasize unlimited" -} diff --git a/sci-biology/arachne/metadata.xml b/sci-biology/arachne/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/arachne/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> |