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Diffstat (limited to 'sci-biology/fastqc/files')
-rw-r--r--sci-biology/fastqc/files/00fastqc1
-rw-r--r--sci-biology/fastqc/files/build.xml59
2 files changed, 0 insertions, 60 deletions
diff --git a/sci-biology/fastqc/files/00fastqc b/sci-biology/fastqc/files/00fastqc
deleted file mode 100644
index 021de8bb0..000000000
--- a/sci-biology/fastqc/files/00fastqc
+++ /dev/null
@@ -1 +0,0 @@
-PATH="/opt/fastqc/bin"
diff --git a/sci-biology/fastqc/files/build.xml b/sci-biology/fastqc/files/build.xml
deleted file mode 100644
index c4a692096..000000000
--- a/sci-biology/fastqc/files/build.xml
+++ /dev/null
@@ -1,59 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<!-- WARNING: Eclipse auto-generated file.
- Any modifications will be overwritten.
- To include a user specific buildfile here, simply create one in the same
- directory with the processing instruction <?eclipse.ant.import?>
- as the first entry and export the buildfile again. -->
-<project basedir="." default="build" name="FastQC">
- <property environment="env"/>
- <property name="debuglevel" value="source,lines,vars"/>
- <property name="target" value="1.5"/>
- <property name="source" value="1.5"/>
- <path id="FastQC.classpath">
- <pathelement location="bin"/>
- <pathelement location="jbzip2-0.9.jar"/>
- <pathelement location="sam-1.103.jar"/>
- <pathelement location="cisd-jhdf5.jar"/>
- </path>
- <target name="init">
- <mkdir dir="bin"/>
- <copy includeemptydirs="false" todir="bin">
- <fileset dir=".">
- <exclude name="**/*.launch"/>
- <exclude name="**/*.java"/>
- </fileset>
- </copy>
- </target>
- <target name="clean">
- <delete dir="bin"/>
- </target>
- <target depends="clean" name="cleanall"/>
- <target depends="build-subprojects,build-project" name="build"/>
- <target name="build-subprojects"/>
- <target depends="init" name="build-project">
- <echo message="${ant.project.name}: ${ant.file}"/>
- <javac debug="true" debuglevel="${debuglevel}" destdir="bin" includeantruntime="false" source="${source}" target="${target}">
- <src path="."/>
- <classpath refid="FastQC.classpath"/>
- </javac>
- </target>
- <target description="Build all projects which reference this project. Useful to propagate changes." name="build-refprojects"/>
- <target description="copy Eclipse compiler jars to ant lib directory" name="init-eclipse-compiler">
- <copy todir="${ant.library.dir}">
- <fileset dir="${ECLIPSE_HOME}/plugins" includes="org.eclipse.jdt.core_*.jar"/>
- </copy>
- <unzip dest="${ant.library.dir}">
- <patternset includes="jdtCompilerAdapter.jar"/>
- <fileset dir="${ECLIPSE_HOME}/plugins" includes="org.eclipse.jdt.core_*.jar"/>
- </unzip>
- </target>
- <target description="compile project with Eclipse compiler" name="build-eclipse-compiler">
- <property name="build.compiler" value="org.eclipse.jdt.core.JDTCompilerAdapter"/>
- <antcall target="build"/>
- </target>
- <target name="FastQCApplication">
- <java classname="uk.ac.babraham.FastQC.FastQCApplication" failonerror="true" fork="yes">
- <classpath refid="FastQC.classpath"/>
- </java>
- </target>
-</project>