diff options
Diffstat (limited to 'sci-biology/fastqc/files')
-rw-r--r-- | sci-biology/fastqc/files/00fastqc | 1 | ||||
-rw-r--r-- | sci-biology/fastqc/files/build.xml | 59 |
2 files changed, 0 insertions, 60 deletions
diff --git a/sci-biology/fastqc/files/00fastqc b/sci-biology/fastqc/files/00fastqc deleted file mode 100644 index 021de8bb0..000000000 --- a/sci-biology/fastqc/files/00fastqc +++ /dev/null @@ -1 +0,0 @@ -PATH="/opt/fastqc/bin" diff --git a/sci-biology/fastqc/files/build.xml b/sci-biology/fastqc/files/build.xml deleted file mode 100644 index c4a692096..000000000 --- a/sci-biology/fastqc/files/build.xml +++ /dev/null @@ -1,59 +0,0 @@ -<?xml version="1.0" encoding="UTF-8" standalone="no"?> -<!-- WARNING: Eclipse auto-generated file. - Any modifications will be overwritten. - To include a user specific buildfile here, simply create one in the same - directory with the processing instruction <?eclipse.ant.import?> - as the first entry and export the buildfile again. --> -<project basedir="." default="build" name="FastQC"> - <property environment="env"/> - <property name="debuglevel" value="source,lines,vars"/> - <property name="target" value="1.5"/> - <property name="source" value="1.5"/> - <path id="FastQC.classpath"> - <pathelement location="bin"/> - <pathelement location="jbzip2-0.9.jar"/> - <pathelement location="sam-1.103.jar"/> - <pathelement location="cisd-jhdf5.jar"/> - </path> - <target name="init"> - <mkdir dir="bin"/> - <copy includeemptydirs="false" todir="bin"> - <fileset dir="."> - <exclude name="**/*.launch"/> - <exclude name="**/*.java"/> - </fileset> - </copy> - </target> - <target name="clean"> - <delete dir="bin"/> - </target> - <target depends="clean" name="cleanall"/> - <target depends="build-subprojects,build-project" name="build"/> - <target name="build-subprojects"/> - <target depends="init" name="build-project"> - <echo message="${ant.project.name}: ${ant.file}"/> - <javac debug="true" debuglevel="${debuglevel}" destdir="bin" includeantruntime="false" source="${source}" target="${target}"> - <src path="."/> - <classpath refid="FastQC.classpath"/> - </javac> - </target> - <target description="Build all projects which reference this project. Useful to propagate changes." name="build-refprojects"/> - <target description="copy Eclipse compiler jars to ant lib directory" name="init-eclipse-compiler"> - <copy todir="${ant.library.dir}"> - <fileset dir="${ECLIPSE_HOME}/plugins" includes="org.eclipse.jdt.core_*.jar"/> - </copy> - <unzip dest="${ant.library.dir}"> - <patternset includes="jdtCompilerAdapter.jar"/> - <fileset dir="${ECLIPSE_HOME}/plugins" includes="org.eclipse.jdt.core_*.jar"/> - </unzip> - </target> - <target description="compile project with Eclipse compiler" name="build-eclipse-compiler"> - <property name="build.compiler" value="org.eclipse.jdt.core.JDTCompilerAdapter"/> - <antcall target="build"/> - </target> - <target name="FastQCApplication"> - <java classname="uk.ac.babraham.FastQC.FastQCApplication" failonerror="true" fork="yes"> - <classpath refid="FastQC.classpath"/> - </java> - </target> -</project> |