diff options
Diffstat (limited to 'sci-biology/pysamstats')
| -rw-r--r-- | sci-biology/pysamstats/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/pysamstats/metadata.xml | 16 | ||||
| -rw-r--r-- | sci-biology/pysamstats/pysamstats-1.1.2.ebuild | 30 |
3 files changed, 0 insertions, 47 deletions
diff --git a/sci-biology/pysamstats/Manifest b/sci-biology/pysamstats/Manifest deleted file mode 100644 index fb8a27ec1..000000000 --- a/sci-biology/pysamstats/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST pysamstats-1.1.2.tar.gz 251400 BLAKE2B 770a34d6f2c983aba78924dac2c42e26dd52113a2abd11dc6b7b416fc6c612104e263d3a62f869534f4ef2e06c4ce4c387d60575f7fb63c8f885f5ac05f9acde SHA512 d294aac0b8ed7144218d24209978e345bf89ba67c9786155c1826dd37c48fd820cda6467530d6b717ab4b84c6988fb65bec2ee679746c5782413babc45e600ef diff --git a/sci-biology/pysamstats/metadata.xml b/sci-biology/pysamstats/metadata.xml deleted file mode 100644 index cc923c1df..000000000 --- a/sci-biology/pysamstats/metadata.xml +++ /dev/null @@ -1,16 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">alimanfoo/pysamstats</remote-id> - <remote-id type="pypi">pysamstats</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/pysamstats/pysamstats-1.1.2.ebuild b/sci-biology/pysamstats/pysamstats-1.1.2.ebuild deleted file mode 100644 index 445ec2162..000000000 --- a/sci-biology/pysamstats/pysamstats-1.1.2.ebuild +++ /dev/null @@ -1,30 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7,8,9} ) - -inherit distutils-r1 - -DESCRIPTION="Calculate stats against genome positions from SAM/BAM/CRAM file" -HOMEPAGE="https://github.com/alimanfoo/pysamstats - https://pypi.python.org/pypi/pysamstats" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -# TODO: fix this -# ModuleNotFoundError: No module named 'pysamstats.opt' -# happens even with the --install option -RESTRICT="test" - -BDEPEND="dev-python/cython[${PYTHON_USEDEP}]" -RDEPEND=" - dev-python/numpy[${PYTHON_USEDEP}] - sci-biology/pysam[${PYTHON_USEDEP}] -" - -distutils_enable_tests pytest |