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* [dev-java/flexdock] version bumpGuillaume Horel2012-01-184-3/+10
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* [dev-python/astlib] Version bump, drop oldKacper Kowalik (Xarthisius)2012-01-175-111/+64
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* version bump and some fixes so that it works with webappconfig again?Martin Mokrejs2012-01-174-0/+238
| | | | (Portage version: 2.1.10.44/git/Linux i686, unsigned Manifest commit)
* [sci-visualization/yt] initial import, ebuild written by meKacper Kowalik (Xarthisius)2012-01-172-0/+55
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* Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciJustin Lecher2012-01-1719-13/+352
|\ | | | | | | | | | | | | | | | | * 'master' of git+ssh://git.overlays.gentoo.org/proj/sci: sci-biology/lastz: A pairwise DNA sequence aligner (also chromosome to chromosome), a BLASTZ replacement sci-biology/YASRA: Yet Another Short Read Assembler to reference using LASTZ sci-biology/gbrowse: added dev-perl/TermReadKey to dependencies sci-biology/libgtextutils: Gordon text utils library [dev-libs/fortrancl] initial import, ebuild written by me
| * sci-biology/lastz: A pairwise DNA sequence aligner (also chromosome to ↵Martin Mokrejs2012-01-174-0/+48
| | | | | | | | chromosome), a BLASTZ replacement
| * sci-biology/YASRA: Yet Another Short Read Assembler to reference using LASTZMartin Mokrejs2012-01-174-0/+44
| | | | | | | | (Portage version: 2.1.10.43/git/Linux i686, unsigned Manifest commit)
| * sci-biology/gbrowse: added dev-perl/TermReadKey to dependenciesMartin Mokrejs2012-01-173-13/+18
| | | | | | | | (Portage version: 2.1.10.43/git/Linux i686, unsigned Manifest commit)
| * sci-biology/libgtextutils: Gordon text utils libraryMartin Mokrejs2012-01-164-0/+41
| | | | | | | | (Portage version: 2.1.10.43/git/Linux i686, unsigned Manifest commit)
| * [dev-libs/fortrancl] initial import, ebuild written by meKacper Kowalik (Xarthisius)2012-01-154-0/+201
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* | New additionJustin Lecher2012-01-174-0/+54
| | | | | | | | (Portage version: 2.2.0_alpha84/git/Linux x86_64, unsigned Manifest commit)
* | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciJustin Lecher2012-01-14474-4323/+30
|\| | | | | | | | | | | | | | | | | | | * 'master' of git+ssh://git.overlays.gentoo.org/proj/sci: Convert to thin manifests (as suggested by alexxy and jlec) Removed because the sources cannot be fetched Removed because the file is non-fetchable Conflicts: sci-chemistry/coot/Manifest
| * Convert to thin manifests (as suggested by alexxy and jlec)Andreas K. Huettel (dilfridge)2012-01-14467-4268/+16
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| * Removed because the sources cannot be fetchedAndreas K. Huettel (dilfridge)2012-01-143-27/+5
| | | | | | | | (Portage version: 2.1.10.44/git/Linux x86_64, unsigned Manifest commit)
| * Removed because the file is non-fetchableAndreas K. Huettel (dilfridge)2012-01-143-27/+5
| | | | | | | | (Portage version: 2.1.10.44/git/Linux x86_64, unsigned Manifest commit)
* | Call python_pkg_setup alwaysJustin Lecher2012-01-143-6/+10
|/ | | | (Portage version: 2.2.0_alpha84/git/Linux x86_64, signed Manifest commit with key 70EB7916)
* Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciSébastien Fabbro2012-01-143-0/+20
|\ | | | | | | | | Conflicts: sys-cluster/mpich2/Manifest
| * mpich2: add link to upstream reportJustin Bronder2012-01-112-7/+8
| | | | | | | | (Portage version: 2.1.10.11/git/Linux x86_64, signed Manifest commit with key 4D7043C9)
* | tweaks to mpich2Sébastien Fabbro2012-01-113-36/+26
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* | Now in main treeSébastien Fabbro2012-01-114-76/+0
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* Move sci-misc/simpy -> dev-python/simpyJustin Lecher2012-01-101-0/+1
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* Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciJustin Lecher2012-01-105-34/+139
|\ | | | | | | | | | | * 'master' of git+ssh://git.overlays.gentoo.org/proj/sci: Drop failing tests for now, fix #393361 Version bump
| * Drop failing tests for now, fix #393361Justin Bronder2012-01-094-5/+84
| | | | | | | | (Portage version: 2.1.10.11/git/Linux x86_64, signed Manifest commit with key 4D7043C9)
| * Version bumpJustin Bronder2012-01-094-34/+60
| | | | | | | | (Portage version: 2.1.10.11/git/Linux x86_64, signed Manifest commit with key 4D7043C9)
* | Version BumpJustin Lecher2012-01-104-9/+26
| | | | | | | | (Portage version: 2.2.0_alpha84/git/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
* | Remove patch, fixed upstreamJustin Lecher2012-01-104-22/+13
| | | | | | | | (Portage version: 2.2.0_alpha84/git/Linux x86_64, signed Manifest commit with key 70EB7916)
* | Bumped EAPI to 4 and added new eautoreconf handling of autotools-utils.eclassJustin Lecher2012-01-093-12/+23
|/ | | | (Portage version: 2.2.0_alpha84/git/Linux x86_64, signed Manifest commit with key 70EB7916)
* Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciJustin Lecher2012-01-098-0/+105
|\ | | | | | | | | | | * 'master' of git+ssh://git.overlays.gentoo.org/proj/sci: sci-biology/artemis-bin: DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool sci-biology/artemis: DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool
| * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciMartin Mokrejs2012-01-08136-226/+2053
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| * | sci-biology/artemis-bin: DNA sequence viewer, annotation (Artemis) and ↵Martin Mokrejs2012-01-084-0/+44
| | | | | | | | | | | | comparison (ACT) tool
| * | sci-biology/artemis: DNA sequence viewer, annotation (Artemis) and ↵Martin Mokrejs2012-01-084-0/+61
| | | | | | | | | | | | comparison (ACT) tool
* | | Fix double installation of spectrum.hJustin Lecher2012-01-095-12/+42
| |/ |/| | | | | (Portage version: 2.2.0_alpha84/git/Linux x86_64, signed Manifest commit with key 70EB7916)
* | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciJustin Lecher2012-01-08296-1805/+1512
|\| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * 'master' of git+ssh://git.overlays.gentoo.org/proj/sci: dev-python/GOGrapher: more robust version from same author is at https://github.com/ntamas/biopython/blob/gosupport which is a rewrite of https://github.com/gotgenes/biopython sci-biology/manatee-igs: new package for prokaryotic genome annotation and editing using chado sci-biology/manatee-igs: new package for prokaryotic genome annotation and editing using chado dev-perl/Log-Cabin: new package, required by sci-biology/manatee-igs New package, ebuild written by me in main tree now in main tree blas svn switch sci herd to sci-* sub herds, full overlay re-manifest plplot-5.9.9 compatibility move dependency for xrootd from main tree move dependency for xrootd from main tree move dependency for xrootd from main tree Conflicts: sci-chemistry/burrow-owl/Manifest sci-chemistry/burrow-owl/metadata.xml sci-chemistry/mgltools-autodocktools/Manifest sci-chemistry/mgltools-autodocktools/metadata.xml sci-chemistry/mgltools-bhtree/Manifest sci-chemistry/mgltools-bhtree/metadata.xml sci-chemistry/mgltools-cmolkit/Manifest sci-chemistry/mgltools-cmolkit/metadata.xml sci-chemistry/mgltools-dejavu/Manifest sci-chemistry/mgltools-dejavu/metadata.xml sci-chemistry/mgltools-geomutils/Manifest sci-chemistry/mgltools-geomutils/metadata.xml sci-chemistry/mgltools-gle/Manifest sci-chemistry/mgltools-gle/metadata.xml sci-chemistry/mgltools-mglutil/Manifest sci-chemistry/mgltools-mglutil/metadata.xml sci-chemistry/mgltools-molkit/Manifest sci-chemistry/mgltools-molkit/metadata.xml sci-chemistry/mgltools-networkeditor/Manifest sci-chemistry/mgltools-networkeditor/metadata.xml sci-chemistry/mgltools-opengltk/Manifest sci-chemistry/mgltools-opengltk/metadata.xml sci-chemistry/mgltools-pmv/Manifest sci-chemistry/mgltools-pmv/metadata.xml sci-chemistry/mgltools-pyautodock/Manifest sci-chemistry/mgltools-pyautodock/metadata.xml sci-chemistry/mgltools-pybabel/Manifest sci-chemistry/mgltools-pybabel/metadata.xml sci-chemistry/mgltools-pyglf/Manifest sci-chemistry/mgltools-pyglf/metadata.xml sci-chemistry/mgltools-qslimlib/Manifest sci-chemistry/mgltools-qslimlib/metadata.xml sci-chemistry/mgltools-scenario/Manifest sci-chemistry/mgltools-scenario/metadata.xml sci-chemistry/mgltools-sff/Manifest sci-chemistry/mgltools-sff/metadata.xml sci-chemistry/mgltools-support/Manifest sci-chemistry/mgltools-support/metadata.xml sci-chemistry/mgltools-symserv/Manifest sci-chemistry/mgltools-symserv/metadata.xml sci-chemistry/mgltools-utpackages/Manifest sci-chemistry/mgltools-utpackages/metadata.xml sci-chemistry/mgltools-viewer-framework/Manifest sci-chemistry/mgltools-viewer-framework/metadata.xml sci-chemistry/mgltools-vision/Manifest sci-chemistry/mgltools-vision/metadata.xml sci-chemistry/mgltools-visionlib/Manifest sci-chemistry/mgltools-visionlib/metadata.xml sci-chemistry/mgltools-volume/Manifest sci-chemistry/mgltools-volume/metadata.xml sci-chemistry/mgltools-webservices/Manifest sci-chemistry/mgltools-webservices/metadata.xml sci-chemistry/mgltools/Manifest sci-chemistry/mgltools/metadata.xml
| * dev-python/GOGrapher: more robust version from same author is at ↵Martin Mokrejs2012-01-084-0/+54
| | | | | | | | https://github.com/ntamas/biopython/blob/gosupport which is a rewrite of https://github.com/gotgenes/biopython
| * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciMartin Mokrejs2012-01-0813-306/+53
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| | * New package, ebuild written by meAndrey Kislyuk2012-01-084-0/+53
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| | * in main treeSébastien Fabbro2012-01-084-114/+0
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| | * now in main treeSébastien Fabbro2012-01-075-192/+0
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| * | sci-biology/manatee-igs: new package for prokaryotic genome annotation and ↵Martin Mokrejs2012-01-081-0/+50
| | | | | | | | | | | | editing using chado
| * | sci-biology/manatee-igs: new package for prokaryotic genome annotation and ↵Martin Mokrejs2012-01-084-0/+101
| | | | | | | | | | | | editing using chado
| * | dev-perl/Log-Cabin: new package, required by sci-biology/manatee-igsMartin Mokrejs2012-01-084-0/+42
| |/ | | | | | | (Portage version: 2.1.10.43/git/Linux i686, unsigned Manifest commit)
| * blas svnSébastien Fabbro2012-01-034-5/+90
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| * switch sci herd to sci-* sub herds, full overlay re-manifestSébastien Fabbro2012-01-03247-1086/+249
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| * plplot-5.9.9 compatibilitySébastien Fabbro2012-01-034-4/+781
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| * move dependency for xrootd from main treeSébastien Fabbro2012-01-032-2/+2
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| * move dependency for xrootd from main treeSébastien Fabbro2012-01-032-2/+2
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| * move dependency for xrootd from main treeSébastien Fabbro2012-01-039-292/+0
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* | Version Bump, #373679Justin Lecher2012-01-083-4/+50
| | | | | | | | (Portage version: 2.2.0_alpha84/git/Linux x86_64, signed Manifest commit with key 70EB7916)
* | Version Bump, #373679Justin Lecher2012-01-084-12/+91
| | | | | | | | (Portage version: 2.2.0_alpha84/git/Linux x86_64, signed Manifest commit with key 70EB7916)
* | Version Bump, #373679Justin Lecher2012-01-084-12/+68
| | | | | | | | (Portage version: 2.2.0_alpha84/git/Linux x86_64, signed Manifest commit with key 70EB7916)