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* media-gfx/librecad: fixed manifestsDongxu Li2013-10-011-1/+1
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* Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciNicolas Bock2013-09-301-1/+1
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| * sci-libs/plasma: fix ManifestAndrew Savchenko2013-10-011-1/+1
| | | | | | | | Fix invalid checksum for plasma-2.5.1.
* | sys-cluster/charm-6.5.1-r1: Fix docs with -j1Nicolas Bock2013-09-303-7/+42
|/ | | | | | Docs don't build when using anything more than -j1. Package-Manager: portage-2.2.1
* sci-chemistry/gamess: Update ManifestReinis Danne2013-09-291-0/+1
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* sci-chemistry/gamess: Bump to 20130501.1Reinis Danne2013-09-293-0/+550
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* sci-biology/bowtie: Exchange common variables, fix SRC_URIJustin Lecher2013-09-283-7/+11
| | | | Package-Manager: portage-2.2.7
* sci-chemistry/coot: Adjust pc patch for latest headJustin Lecher2013-09-282-24/+21
| | | | Package-Manager: portage-2.2.6
* sci-chemistry/freeon-1.0.5: Version bump.Nicolas Bock2013-09-273-0/+39
| | | | Package-Manager: portage-2.2.1
* sys-cluster/charm-6.5.1-r1: Added python dependenciesNicolas Bock2013-09-272-8/+18
| | | | | | | The documentation is built partly with python2.x scripts. I added the necessary dependencies. Package-Manager: portage-2.2.1
* sys-cluster/charm-6.5.1-r1: doc depends on python-2Nicolas Bock2013-09-272-0/+5
| | | | Package-Manager: portage-2.2.1
* sys-cluster/charm-6.5.1-r1: Added another missing DEPEND.Nicolas Bock2013-09-272-0/+4
| | | | Package-Manager: portage-2.2.1
* Merge branch 'master' of github.com:gentoo-science/sciNicolas Bock2013-09-271-0/+4
|\ | | | | | | | | Conflicts: sys-cluster/charm/ChangeLog
| * fix broken patchChristoph Junghans2013-09-272-1/+5
| | | | | | | | Package-Manager: portage-2.2.1
* | sys-clyster/charm-6.5.1-r1: Fix missing DEPEND.Nicolas Bock2013-09-276-21/+71
|/ | | | | | | This addresses bug 486202. The ebuild had a missing DEPEND using the doc USE flag. Package-Manager: portage-2.2.1
* sci-physics/lammps-20130923: Version bump.Nicolas Bock2013-09-275-223/+8
| | | | | | I also removed older versions to clean up a bit. Package-Manager: portage-2.2.1
* sci-chemistry/freeon-1.0.4: Version bump.Nicolas Bock2013-09-277-155/+20
| | | | | | | I also removed older versions from before the new versioning scheme. This includes the patches, which are not needed anymore. Package-Manager: portage-2.2.1
* Merge pull request #116 from cel4/masterJustin2013-09-264-0/+85
|\ | | | | sci-biology/bowtie: Added ebuild for bowtie-2.1.0.
| * sci-biology/bowtie: fixed check for sse2 support.cel2013-09-262-14/+9
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| * sci-biology/bowtie: Added ebuild for bowtie-2.1.0.cel2013-09-254-0/+90
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* | Add sci-chemistry/openbabel-ruby live ebuildReinis Danne2013-09-263-0/+100
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* | Add sci-chemistry/openbabel-python live ebuildReinis Danne2013-09-263-0/+106
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* | Add sci-chemistry/openbabel-perl live ebuildReinis Danne2013-09-263-0/+86
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* | Add sci-chemistry/openbabel-java live ebuildReinis Danne2013-09-263-0/+85
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* | sci-chemistry/openbabel: Add live ebuildReinis Danne2013-09-263-0/+117
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* | sci-physics/abinit-7.4.2 finally made to actually build and install (tests ↵Honza Macháček2013-09-262-11/+10
| | | | | | | | | | | | have to be configured for their Makefile to be where it is looked for during the installation). Testing scripts, written for Python 2, made to run in an environment with Python 3 selected as the main interpreter. Package-Manager: portage-2.2.6
* | There is apparently something wrong happenning with my commits. Trying to go ↵Honza Macháček2013-09-269-5/+527
|\| | | | | | | on and get somewhere.
| * sci-biology/mira: Fix m4 macrodir locationJustin Lecher2013-09-254-8/+15
| | | | | | | | Package-Manager: portage-2.2.7
| * version bumpMartin Mokrejš2013-09-251-0/+76
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| * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciMartin Mokrejš2013-09-2557-1281/+732
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| * | Upstream accidentally dropped some of my patch chunks while preparing 1.62 ↵Martin Mokrejš2013-09-255-0/+439
| | | | | | | | | | | | release. Bringing them back myself at least through sci overlay.
* | | Commits of sci-libs/bigdft-abi-1.0.4-r2 messed up, trying to clean up my mess.Honza Macháček2013-09-233-1/+33
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| * | Previously announced change of sci-libs/bigdft-abi actually done. Added a ↵Honza Macháček2013-09-233-1/+33
| | | | | | | | | | | | metadata file. Dealing with more complaints of repoman posponed.
* | | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciHonza Macháček2013-09-2321-163/+217
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| * | sci-chemistry/freeon-1.0.3: Fixed broken ebuild.Nicolas Bock2013-09-202-1/+6
| | | | | | | | | | | | Package-Manager: portage-2.2.1
| * | Merge branch 'master' of github.com:gentoo-science/sciNicolas Bock2013-09-2042-1223/+416
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| | * | sci-chemistry/modeller: Mask lib dir for revdep-rebuild, #474696Justin Lecher2013-09-202-0/+11
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.6
| | * | sci-libs/scikits_image: Merge tree changesJustin Lecher2013-09-202-2/+5
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.6
| | * | dev-perl/Bio-BigFile: Version BUmp, fix depsJustin Lecher2013-09-204-10/+17
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.6
| | * | sci-libs/scikits_image: Drop KEYWORDS from live ebuildJustin Lecher2013-09-203-9/+13
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.6
| | * | Fixing sandbox violationsFrançois Bissey2013-09-206-135/+121
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.6
| | * | The metadata of sci-physics/abinit augmented by the description of the ↵Honza Macháček2013-09-202-2/+8
| | | | | | | | | | | | | | | | | | | | | | | | etsf_io USE flag. Package-Manager: portage-2.2.1
| | * | sci-libs/bigdft-abi-1.0.4-r2.ebuild modified from -r1 to avoid sandbox ↵Honza Macháček2013-09-202-0/+6
| | | | | | | | | | | | | | | | violation when generating TeX fonts. Metadata file added, solution to other repoman complaints postponed.
| | * | sci-libs/wannier90-1.2-r2.ebuild modified from -r1 to avoid sandbox ↵Honza Macháček2013-09-202-1/+10
| | | | | | | | | | | | | | | | | | | | | | | | violation when generating TeX fonts. Package-Manager: portage-2.2.1
| | * | sci-libs/bigdft removed. Superseded by sci-physics/bigdft and ↵Honza Macháček2013-09-2014-907/+0
| | | | | | | | | | | | | | | | sci-libs/bigdft-abi
| | * | sci-physics/abinit updated to 7.4.2, the new way of testing adopted. Use of ↵Honza Macháček2013-09-206-154/+208
| | | | | | | | | | | | | | | | | | | | | | | | atompaw, bigdft, libxc, and wannier90 made optional, driven by USE flags (atompaw, bigdft, libxc, wannier). USE flag levmar for the new optional Levenberg-Marquardt least-squares algorithm support added. Ebuild cleaned up a bit. Package-Manager: portage-2.2.1
| | * | sci-physics/openm updated to 3.7.6, corrected linking with fortran code ↵Honza Macháček2013-09-203-3/+17
| | | | | | | | | | | | | | | | | | | | | | | | using gcc. Package-Manager: portage-2.2.1
| * | | sci-chemistry/freeon-1.0.3: Version bump.Nicolas Bock2013-09-204-0/+41
| |/ / | | | | | | | | | Package-Manager: portage-2.2.1
| * | sci-chemistry/coot: Clean for latest HEADJustin Lecher2013-09-192-7/+4
| | | | | | | | | | | | Package-Manager: portage-2.2.6
* | | The metadata of sci-physics/abinit augmented by the description of the ↵Honza Macháček2013-09-192-2/+8
| | | | | | | | | | | | | | | | | | etsf_io USE flag. Package-Manager: portage-2.2.1