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* sci-biology/khmer: Version BUmpJustin Lecher2014-05-154-1/+71
* Imported to treeJustin Lecher2014-05-0710-304/+0
* Configure worksJustin Lecher2014-05-061-8/+8
* sci-biology/trf-4.07b: version bump; install some HTML helpfiles as wellMartin Mokrejš2014-04-224-0/+61
* sci-biology/mira-4.0.2: version bumpMartin Mokrejš2014-04-202-1/+1
* sci-biology/biopython: ops, taking back my own testing patchesMartin Mokrejš2014-04-183-224/+4
* sci-biology/biopython: upstream patch to downgrade an assert to a warningMartin Mokrejš2014-04-188-1/+371
* sci-biology/bedtools: version bump per bug #505538Martin Mokrejš2014-04-154-0/+59
* sci-biology/VelvetOptimiser: add requirement for threaded perlMartin Mokrejš2014-04-152-1/+5
* sci-biology/VelvetOptimiser: new packageMartin Mokrejš2014-04-154-0/+48
* sci-biology/velvetk: new packageMartin Mokrejš2014-04-154-0/+48
* sci-biology/nesoni: new package, needs some dev-lang/R -based packages to be ...Martin Mokrejš2014-04-154-0/+53
* sci-biology/barrnap: new package, package contains bundled binaries, untestedMartin Mokrejš2014-04-154-0/+41
* sci-biology/mira-4.0.1: bump to current recommended bugfix releaseMartin Mokrejš2014-04-123-0/+82
* sci-biology/consed: add a stub file for consedrc; refer to it via CONSED_PARA...Martin Mokrejš2014-04-059-0/+30
* sci-biology/consed: fix more hardcoded pathsMartin Mokrejš2014-04-059-8/+29
* sci-biology/consed: replace hardcoded CONSED_HOME path in installed perl scri...Martin Mokrejš2014-04-029-1/+14
* sci-biology/khmer: upstream dropped the bundled zlib/bzip2 use if it is avail...Martin Mokrejš2014-03-312-18/+22
* sci-biology/YASRA: version bump to a version without compile errors when gcc-...Martin Mokrejš2014-03-313-3/+9
* sci-biology/RADtools: new packageMartin Mokrejš2014-03-315-0/+95
* sci-biology/tablet: skeleton for a new package eventually to replace current ...Martin Mokrejš2014-03-316-0/+224
* sci-biology/stacks: skeleton for a new package; needs webapp team help, *some...Martin Mokrejš2014-03-314-0/+69
* sci-biology/biopieces: skeleton for a new package; has it's own install.sh sc...Martin Mokrejš2014-03-315-0/+147
* sci-biology/scan_for_matches: new package, LICENSE not explicitly avalaible h...Martin Mokrejš2014-03-314-0/+46
* sci-biology/ncbi-tools++: add deps on jpeg-turboMartin Mokrejš2014-03-251-1/+1
* sci-biology/cutadapt: switch to use newer source code location, add support f...Martin Mokrejš2014-03-254-2/+60
* sci-biology/khmer: Also drop sphinx as build requirementJustin Lecher2014-03-243-0/+6
* sci-biology/staden: fix ESVN_REPO_URI to include trailing 'src/' so that we d...Martin Mokrejš2014-03-242-4/+5
* sci-biology/ngs_backbone: added an ebuild for latest releaseMartin Mokrejš2014-03-245-0/+179
* sci-biology/mgblast: initial ebuild but while it needs an old version of ncbi...Martin Mokrejš2014-03-244-0/+67
* sci-biology/BamView: dropped KEYWORDSMartin Mokrejš2014-03-242-1/+5
* sci-biology/BamView: not sure if we need a separate package; is said to be pa...Martin Mokrejš2014-03-243-0/+31
* sci-biology/mapview-bin: new package, missing LICENSE, upstream website is downMartin Mokrejš2014-03-244-0/+51
* sci-biology/emboss-6.3.1_p4-r2: added plplot dependency, trying to get rid of...Martin Mokrejš2014-03-242-4/+14
* sci-biology/freebayes: a new package skeleton; need to retrive from git in a ...Martin Mokrejš2014-03-243-0/+49
* sci-biology/pileup: dropped KEYWORDS due to misisng LICENSEMartin Mokrejš2014-03-242-2/+6
* sci-biology/pileup: new package; a pileup pipeline used along SSAHA2Martin Mokrejš2014-03-244-0/+86
* sci-biology/sga: new package; forces its own optimization flags but works fineMartin Mokrejš2014-03-243-0/+66
* sci-biology/ngsview: new package skeleton, needs qt team helpMartin Mokrejš2014-03-244-0/+47
* sci-biology/scythe: new package, bundled Makefile forces -O3, wrong version n...Martin Mokrejš2014-03-243-0/+45
* sci-biology/sickle: new packageMartin Mokrejš2014-03-243-0/+45
* API bumped, whitespace removalMartin Mokrejš2014-03-242-2/+5
* added some dev-java dependencies and removed some bundled .jar filesMartin Mokrejš2014-03-242-1/+68
* sci-biology/artemis-bin: documented dependencesMartin Mokrejš2014-03-242-1/+5
* sci-biology/artemis: documented dependencesMartin Mokrejš2014-03-242-0/+5
* sci-biology/igv-2.0.35: version bumpMartin Mokrejš2014-03-232-2/+41
* sci-biology/consed2gap: new package, worksMartin Mokrejš2014-03-234-0/+57
* sci-biology/inGAP-bin: new package; needs java team helpMartin Mokrejš2014-03-234-0/+58
* sci-biology/eval: new package; needs perl team help to install this evil pack...Martin Mokrejš2014-03-234-0/+54
* sci-biology/cgview-bin: new package, needs java team helpMartin Mokrejš2014-03-234-0/+41