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* sci-biology/arachne: drop dead packageAndrew Ammerlaan2022-01-253-52/+0
* sci-biology/cortex_var: drop dead packageAndrew Ammerlaan2022-01-253-68/+0
* sci-biology/longstitch: add keywordsAndrew Ammerlaan2022-01-251-5/+4
* sci-biology/LINKS: bump to 2.0.1Andrew Ammerlaan2022-01-253-51/+21
* sci-biology/mantee*: drop dead packageAndrew Ammerlaan2022-01-256-151/+0
* sci-biology/mrsfast: drop dead packageAndrew Ammerlaan2022-01-253-40/+0
* sci-biology/oases: drop dead packageAndrew Ammerlaan2022-01-255-109/+0
* sci-biology/primerD: drop dead packageAndrew Ammerlaan2022-01-253-55/+0
* sci-biology/sailfish: drop dead packageAndrew Ammerlaan2022-01-257-319/+0
* sci-biology/pufferfish: drop dead packageAndrew Ammerlaan2022-01-254-81/+0
* sci-biology/salmon: bump to 1.6.0Andrew Ammerlaan2022-01-254-39/+189
* sci-biology/sambamba: remove packageAndrew Ammerlaan2022-01-254-81/+0
* sci-biology/stacks: bump to version 2.60Andrew Ammerlaan2022-01-252-18/+15
* sci-biology/subread: bump to 2.0.3Andrew Ammerlaan2022-01-253-18/+5
* sci-biology/symap: drop dead packageAndrew Ammerlaan2022-01-253-49/+0
* sci-biology/trinityrnaseq: bump to 2.1.3.2Andrew Ammerlaan2022-01-253-71/+46
* sci-biology/GAL: fix installAndrew Ammerlaan2022-01-252-22/+21
* sci-biology/vcflib: bump to 1.0.3Andrew Ammerlaan2022-01-252-11/+6
* sci-biology/wcd: remove dead packageAndrew Ammerlaan2022-01-255-92/+0
* sci-biology/blasr: bump to 5.3.5Andrew Ammerlaan2022-01-232-8/+7
* sci-biology/libblasr: bump to 5.3.5Andrew Ammerlaan2022-01-232-8/+8
* sci-biology/pbbam: bump to 1.8.1Andrew Ammerlaan2022-01-232-2/+3
* sci-biology/pbcopper: bump to 1.9.5Andrew Ammerlaan2022-01-232-2/+2
* sci-biology/pbbam: drop liveAndrew Ammerlaan2022-01-231-26/+0
* sci-biology/salmon: drop liveAndrew Ammerlaan2022-01-231-32/+0
* sci-biology/conrad: remove ancient java packageAndrew Ammerlaan2022-01-233-68/+0
* sci-biology/cramtools: remove old java packageAndrew Ammerlaan2022-01-233-42/+0
* sci-biology/cramtools: remove old java packageAndrew Ammerlaan2022-01-233-50/+0
* sci-biology/quorum: remove old java packageAndrew Ammerlaan2022-01-234-115/+0
* sci-biology/jigsaw: remove old java packageAndrew Ammerlaan2022-01-233-41/+0
* sci-biology/jtreeview: remove old java packageAndrew Ammerlaan2022-01-234-87/+0
* sci-biology/fsl: drop oldAndrew Ammerlaan2022-01-153-371/+0
* sci-biology/ngs: properly use the java eclassAndrew Ammerlaan2022-01-151-3/+3
* sci-biology/fastqc: drop useless blank lineAndrew Ammerlaan2022-01-151-1/+0
* sci-biology/salmon: drop unavailable flagAndrew Ammerlaan2022-01-151-2/+2
* sci-biology/pbcopper: drop unavailable flagAndrew Ammerlaan2022-01-151-2/+2
* sci-biology/pbbam: drop unavailable flagAndrew Ammerlaan2022-01-151-2/+2
* sci-biology/minimap2: version bump 2.24, add python flagAndrew Ammerlaan2022-01-153-58/+64
* sci-biology/ngs: add missing dep on java compilerAndrew Ammerlaan2022-01-151-0/+1
* sci-biology/fastqc: version bump to 0.11.9Andrew Ammerlaan2022-01-155-109/+42
* sci-biology/pybedtools: bump to version 0.8.2Andrew Ammerlaan2022-01-152-23/+14
* profiles/updates: move sra_sdk to sra-toolsAndrew Ammerlaan2022-01-156-254/+0
* sci-biology/sra-tools: rename from sra_sdk, add version 2,11,3Andrew Ammerlaan2022-01-156-0/+226
* sci-biology/ncbi-vdb: add new dep of sra-toolsAndrew Ammerlaan2022-01-153-0/+58
* sci-biology/ngs: add new dep of sra-toolsAndrew Ammerlaan2022-01-153-0/+55
* sci-biology/fsl: add version 6.0.5Andrew Ammerlaan2022-01-142-0/+221
* sci-biology/spm: cleanup oldAndrew Ammerlaan2022-01-143-76/+0
* sci-biology/jellyfish: fix configure phase, add missing depsAndrew Ammerlaan2022-01-141-8/+4
* sci-biology/abyss: move the new versions to ::gentooAndrew Ammerlaan2022-01-137-217/+0
* sci-biology/ncbi-blast+: fix MissingInheritsAndrew Ammerlaan2021-12-161-1/+4