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* Merge remote-tracking branch 'github/master'Justin Lecher2014-10-261-3/+3
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * github/master: (66 commits) sci-physics/root: Fix compilation with USE="mysql" wrt bug #523996; fix die_compiler message sync with gx86 net-libs/xrootd: version bump and fix bug 521496 travis.yml: use newer portage version fixed bash-comp (bug #526320) version bump sci-chemistry/pymol: Patch included upstream sci-chemistry/pymol: Fix broken plugin listing dev-python/ccdproc: Version bump to 0.2.1 Thanks to kiwifb for reporting https://github.com/gentoo-science/sci/issues/280 - Fix openblas: discrepancy between installed libraries and .pc file. Thanks to kiwifb for reporting https://github.com/gentoo-science/sci/issues/280 - Fix openblas: discrepancy between installed libraries and .pc file. sci-chemistry/pymol: Fix upstream buildsystem The fix for Bug 524612 failed in src_install building openblas from git. The fix is to move applying the patch to src_compile after building the library, then remove config.h and config_last.h; make config.h - ignoring the spurious warning; then cp config.h to config_last.h. Fix Bug 524612 - [science overlay] sci-libs/openblas-0.2.11 - Assembler messages: ../kernel/x86_64/gemm_kernel_8x4_barcelona.S:451: Error: missing ')', thanks to Juergen Rose, Jean-Francis Roy and Steven Trogdon for reporting. The problem was that applying the -0.2.11-openblas_config_header_same_between_ABIs.patch patch in src_prepare() causes build failures on assembler code as the assembler does not understand sizeof(float). So delay applying the patch until src_install(). Bump openblas to 0.2.12. dev-python/ccdproc: Version bump to 0.2.1 dev-cpp/eigen: version bump sci-chemistry/pymol: Import tree changes version bump sys-cluster/openmpi: bump sys-cluster/openmpi: bump ...
| * ncbi-tools++: fix prefix libdir, muparser/hdf5 use flagsmschubert2014-10-091-3/+3
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* | Moved to treeJustin Lecher2014-10-2613-734/+0
|/ | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/ONTO-PERL: Version BUmp; Bump to EAPI=5Justin Lecher2014-09-244-8/+14
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* sci-biology/swissknife: Version BUmp; Bump to EAPI=5Justin Lecher2014-09-244-6/+14
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* sci-biology/est2uni: Bump to EAPI=5Justin Lecher2014-09-242-1/+4
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* sci-biology/tgicl: Bump to EAPI=5Justin Lecher2014-09-243-17/+26
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* sci-biology/gbrowse: Bump to EAPI=5Justin Lecher2014-09-245-14/+18
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* sci-biology/estscan: Bump to EAPI=5Justin Lecher2014-09-242-27/+28
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* sci-biology/consed2gap: Bump to EAPI=5Justin Lecher2014-09-244-18/+22
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* fixed DESCRIPTIONChristoph Junghans2014-09-162-1/+4
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* fixed DESCRIPTIONChristoph Junghans2014-09-162-3/+5
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* clean upChristoph Junghans2014-09-162-15/+17
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* fixed DESCRIPTIONChristoph Junghans2014-09-162-2/+4
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* fixed DESCRIPTIONChristoph Junghans2014-09-163-4/+8
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* fixed DESCRIPTIONChristoph Junghans2014-09-162-1/+7
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* clean upChristoph Junghans2014-09-162-3/+5
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* clean upChristoph Junghans2014-09-162-1/+5
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* clean upChristoph Junghans2014-09-162-2/+4
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* removed empty lineChristoph Junghans2014-09-162-2/+3
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* clean upChristoph Junghans2014-09-162-11/+13
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* clean upChristoph Junghans2014-09-162-1/+5
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* clean upChristoph Junghans2014-09-162-1/+4
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* clean upChristoph Junghans2014-09-162-1/+4
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* removed empty lineChristoph Junghans2014-09-163-2/+4
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* added licenseChristoph Junghans2014-09-152-5/+10
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* major clean, drop old version and unused patchesChristoph Junghans2014-09-1515-4662/+15
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* added licenseChristoph Junghans2014-09-152-3/+7
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* added licenseChristoph Junghans2014-09-152-4/+7
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* added licenseChristoph Junghans2014-09-152-3/+5
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* mapview-bin: upstream deadChristoph Junghans2014-09-154-51/+0
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* added licenseChristoph Junghans2014-09-152-5/+7
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* added licenseChristoph Junghans2014-09-152-3/+6
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* added licenseChristoph Junghans2014-09-152-4/+5
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* added licenseChristoph Junghans2014-09-152-1/+7
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* added licenseChristoph Junghans2014-09-152-2/+4
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* added metadata.xmlChristoph Junghans2014-09-153-1/+16
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* added metadata.xmlChristoph Junghans2014-09-153-2/+14
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* drop ~x86 as deps are missingChristoph Junghans2014-09-122-3/+4
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* drop sci-biology/jalview as dep <sci-chemistry/jmol-11.1 in missingChristoph Junghans2014-09-124-87/+0
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* sci-biology/cutadapt: version bumpJauhien Piatlicki2014-09-113-0/+31
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* sci-biology/cutadapt: fix SRC_URIJauhien Piatlicki2014-09-113-3/+7
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* sci-biology/sickle: fix licenseJauhien Piatlicki2014-09-051-1/+1
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* sci-biology/VarScan: add Non-profit-OSL-3.0 license and metadata.xmlJauhien Piatlicki2014-09-051-0/+5
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* sci-biology/sga: silence repomanJauhien Piatlicki2014-09-051-0/+3
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* sci-biology/eval: Add HOMEPAGE and LICENSEJauhien Piatlicki2014-09-042-1/+5
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* sci-biology/MaSuRCA: add dependency on sci-biology/quorumMartin Mokrejš2014-07-041-1/+2
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* sci-biology/clview: add dependency on =x11-libs/fox-1.6*Martin Mokrejš2014-07-043-3/+9
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* sci-biology/caftools: clarified package descriptionMartin Mokrejš2014-07-042-3/+6
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* sci-biology/emboss-6.3.1_p4-r2: added a patch for 'undefined reference to ↵Martin Mokrejš2014-07-043-0/+20
| | | | | | c_plwid' bug #493724 Package-Manager: portage-2.2.7