| Commit message (Collapse) | Author | Age | Files | Lines | |
|---|---|---|---|---|---|
| * | sci-biology/bowtie: Exchange common variables, fix SRC_URI |   Justin Lecher | 2013-09-28 | 3 | -7/+11 |
| | | | | | Package-Manager: portage-2.2.7 | ||||
| * | sci-biology/bowtie: fixed check for sse2 support. |   cel | 2013-09-26 | 2 | -14/+9 |
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| * | sci-biology/bowtie: Added ebuild for bowtie-2.1.0. | cel | 2013-09-25 | 4 | -0/+90 |
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| * | sci-biology/mira: Fix m4 macrodir location | Justin Lecher | 2013-09-25 | 4 | -8/+15 |
| | | | | | Package-Manager: portage-2.2.7 | ||||
| * | version bump |   Martin Mokrejš | 2013-09-25 | 1 | -0/+76 |
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| * | Upstream accidentally dropped some of my patch chunks while preparing 1.62 ↵ | Martin Mokrejš | 2013-09-25 | 5 | -0/+439 |
| | | | | | release. Bringing them back myself at least through sci overlay. | ||||
| * | InCVs | Justin Lecher | 2013-09-17 | 3 | -64/+0 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | Mask the 6.6.0 version due to build breakage; add the missing plcol patch ↵ | Martin Mokrejš | 2013-09-16 | 3 | -5/+138 |
| | | | | | copied over from 6.3.1 | ||||
| * | Support at least when user passes USE='gnutls -ssl -openssl' but what we ↵ | Martin Mokrejš | 2013-09-14 | 2 | -1/+12 |
| | | | | | really want is to prefer gnutls over openssl if both are available on the system. | ||||
| * | Add upstream ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch with ↵ | Martin Mokrejš | 2013-09-14 | 3 | -4/+20 |
| | | | | | line offset changes. | ||||
| * | Fix URL to point to a public SVN repository | Martin Mokrejš | 2013-09-14 | 5 | -2/+35 |
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| * | more 12.0.0 cleanup, still not working | Martin Mokrejš | 2013-09-14 | 5 | -7/+50 |
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| * | add ↵ | Martin Mokrejš | 2013-09-13 | 3 | -2/+28 |
| | | | | | ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch; get around a bug in the C++ Toolkit's handling of --without-runpath with certain linker versions by running configure with -Wl,-rpath-link,_build/lib in LDFLAGS (assuming _build is an absolute path; otherwise, prepend /home/mmokrejs/proj/sci/sci-biology/ncbi-tools++/) [from Aaron Ucko]. | ||||
| * | fix version number in the ebuild | Martin Mokrejš | 2013-09-13 | 1 | -1/+1 |
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| * | Remove redundant connect from DLL_LIB lines. | Martin Mokrejš | 2013-09-13 | 1 | -0/+1 |
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| * | Remove redundant connect from DLL_LIB lines. | Martin Mokrejš | 2013-09-13 | 1 | -0/+16 |
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| * | Remove redundant connect from DLL_LIB lines. | Martin Mokrejš | 2013-09-13 | 2 | -2/+2 |
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| * | No, the fix-creaders-linking is needed for 12.0.0 as well. | Martin Mokrejš | 2013-09-13 | 3 | -0/+25 |
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| * | Latest release which needs so far only the two Gentoo patches. Would be ↵ | Martin Mokrejš | 2013-09-13 | 3 | -0/+2383 |
| | | | | | better to drop from their filename to avoid their duplication I think. | ||||
| * | add glew to dependencies inferrred via mesa; fix lib/libxobjread.so: ↵ | Martin Mokrejš | 2013-09-13 | 3 | -2/+25 |
| | | | | | undefined reference to 'AlignmentFileFree' message by upstream patch | ||||
| * | sci-biology/biopython-1.62: version bump | Martin Mokrejš | 2013-09-11 | 1 | -0/+10 |
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| * | sci-biology/biopython-1.62: version bump | Martin Mokrejš | 2013-09-11 | 2 | -0/+54 |
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| * | Partial success on removal of all crazy libraries and includes from CFLAGS ↵ | Martin Mokrejš | 2013-09-11 | 10 | -6/+722 |
| | | | | | | | and LDFLAGS used throught EMBOSS sources. While compile commandline are now clean still libtool is passed with LDFLAGS carrying over the many X11 and graphics libraries. Seems the source is ltmain.sh which uses on the linker lines but editing m4/libtool.m4 is not the right way to do it. Same applies to ltmain.sh in top-level directory. Any volunteers? Bug #394425 Package-Manager: portage-2.1.12.2 | ||||
| * | Fix indentation error and remove unused import of string module (there could ↵ | Martin Mokrejš | 2013-09-11 | 5 | -1/+80 |
| | | | | | | | be more cleanup as suggested by pychecker). Credits to http://sourceforge.net/p/amos/support-requests/1/ Package-Manager: portage-2.1.12.2 | ||||
| * | Merge pull request #104 from TheChymera/psychopy |   Sébastien Fabbro | 2013-09-03 | 5 | -10/+128 |
| |\ | | | | | New, updated Psychopy ebuilds | ||||
| | * | Listed app-admin/eselect under DEP only (instead of RDEP) |   Horea Christian | 2013-09-04 | 4 | -15/+23 |
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| | * | Deleted "Science;Biology" specification for desktoop entries. | Horea Christian | 2013-09-04 | 4 | -4/+4 |
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| | * | New Manifests | Horea Christian | 2013-08-30 | 1 | -0/+2 |
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| | * | Added keywords. | Horea Christian | 2013-08-30 | 1 | -1/+1 |
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| | * | Re-added keywords | Horea Christian | 2013-08-30 | 1 | -1/+1 |
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| | * | Removed keywords | Horea Christian | 2013-08-30 | 1 | -1/+1 |
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| | * | New, updated Psychopy ebuilds | Horea Christian | 2013-08-30 | 3 | -1/+109 |
| | | | | | | | | | (1.77.02 and 1.78.00) | ||||
| * | | Not yet completed ebuild for a new package |   Martin Mokrejš | 2013-08-29 | 3 | -0/+41 |
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| * | | New package for FASTA/FASTQ preprocessing | Martin Mokrejš | 2013-08-29 | 3 | -0/+37 |
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| * | | New package needed for upcoming fastx_toolkit | Martin Mokrejš | 2013-08-29 | 3 | -4/+10 |
| | | | | | | | | | Package-Manager: portage-2.1.12.5 | ||||
| * | | Initial, not yet working ebuild of BG7. | Martin Mokrejš | 2013-08-29 | 2 | -0/+37 |
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| * | | pushing out a draft ebuild from manatee-jcvi | Martin Mokrejš | 2013-08-29 | 4 | -0/+74 |
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| * | | Both versions of manatee have same license, so rename unify the license ↵ | Martin Mokrejš | 2013-08-29 | 2 | -1/+6 |
| | | | | | | | | | | | | | filename. Package-Manager: portage-2.1.12.5 | ||||
| * | | Added dev-perl/Bio-DB-Das-Chado and improved description line. Renamed the ↵ | Martin Mokrejš | 2013-08-29 | 3 | -4/+13 |
| |/ | | | | | | License file. Package-Manager: portage-2.1.12.5 | ||||
| * | big fixes of metadata and package sub-herd re-distribution |   Sébastien Fabbro | 2013-06-18 | 1 | -3/+0 |
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| * | sci-biology/twinscan: Bump to EAPI=5 and fix license | Justin Lecher | 2013-06-16 | 4 | -17/+31 |
| | | | | | Package-Manager: portage-2.2.0_alpha180 | ||||
| * | sci-biology/ssaha2-bin: Version Bump; restrict license; add QA_PREBUILT for ↵ | Justin Lecher | 2013-06-16 | 4 | -21/+30 |
| | | | | | | | binaries Package-Manager: portage-2.2.0_alpha180 | ||||
| * | sci-biology/smalt-bin: Version Bump; restrict license; add QA_PREBUILT for ↵ | Justin Lecher | 2013-06-16 | 5 | -32/+44 |
| | | | | | | | binaries Package-Manager: portage-2.2.0_alpha180 | ||||
| * | sci-biology/sequin: Version BUmp; restrcit license; add QA_PREBUILT for ↵ | Justin Lecher | 2013-06-16 | 4 | -35/+54 |
| | | | | | | | binaries; install html files into sys path Package-Manager: portage-2.2.0_alpha180 | ||||
| * | sci-biology/quicktree: Bump to EAPI=5 and fix license | Justin Lecher | 2013-06-16 | 4 | -15/+20 |
| | | | | | Package-Manager: portage-2.2.0_alpha180 | ||||
| * | sci-biology/gap2caf: Bump to EAPI=5 and fix license; make it build with ↵ | Justin Lecher | 2013-06-16 | 4 | -29/+38 |
| | | | | | | | eautoreconf Package-Manager: portage-2.2.0_alpha180 | ||||
| * | sci-biology/erpin: Bump to EAPI=5 and respect FLAGS / AR | Justin Lecher | 2013-06-16 | 4 | -18/+24 |
| | | | | | Package-Manager: portage-2.2.0_alpha180 | ||||
| * | sci-biology/clover: Version BUmp; fixed license; respect LDFLAGS | Justin Lecher | 2013-06-16 | 5 | -48/+51 |
| | | | | | Package-Manager: portage-2.2.0_alpha180 | ||||
| * | sci-biology/caftools: Drop old; Bump to EAPI=5 and fix license | Justin Lecher | 2013-06-16 | 5 | -64/+38 |
| | | | | | Package-Manager: portage-2.2.0_alpha180 | ||||
| * | sci-biology/YASRA: Version BUmp; add KEYWORDS | Justin Lecher | 2013-06-16 | 3 | -12/+9 |
| | | | | | Package-Manager: portage-2.2.0_alpha180 | ||||
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