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* sci-libs/tensorflow: Move our flags to bazel-get-flags()Mark Wright2018-05-031-14/+18
| | | | Package-Manager: Portage-2.3.33, Repoman-2.3.9
* sci-libs/tensorflow: Use CPPFLAGS, CXXFLAGS, LDFLAGS.Mark Wright2018-05-021-7/+33
| | | | | | | | | | Setting CPPFLAGS should help #861 sci-libs/tensorflow: respect EPREFIX. Require [${PYTHON_USEDEP}] on Python deps, which should help the dev-python/wheel not working in #849 sci-libs/tensorflow: new package, ebuilds with IUSE="cuda mpi" need improvements. Package-Manager: Portage-2.3.31, Repoman-2.3.9
* sci-libs/tensorflow: Fix the C++ header findMark Wright2018-05-011-4/+3
| | | | Package-Manager: Portage-2.3.31, Repoman-2.3.9
* sci-libs/tensorflow: Bump to 1.8.0, build C and C++ APIsMark Wright2018-05-012-0/+173
| | | | Package-Manager: Portage-2.3.31, Repoman-2.3.9
* sci-libs/gmsh: version bump to 3.0.6Matthias Maier2018-04-242-0/+94
| | | | Package-Manager: Portage-2.3.31, Repoman-2.3.9
* sci-libs/tensorflow: try to determine site-packages path properlyMartin Mokrejs2018-04-181-4/+10
| | | | | | | | | This could support multiple python installations, improving further changes from https://github.com/gentoo/sci/issues/862 However, still untested by me due to sandbox violations, sorry. Package-Manager: Portage-2.3.28, Repoman-2.3.9
* sci-libs/tensorflow: more ebuild tweaks (still not working)Martin Mokrejs2018-04-181-8/+34
| | | | | | | | | | | | | | | | | | | - partially incorporate changes from https://github.com/gentoo/sci/issues/862 - respect more USE flags: cuda mpi - similar addition of opencl use flag doe snot work for me, repoman complains with: IUSE.invalid [fatal] 1 sci-libs/tensorflow/tensorflow-1.7.0.ebuild: opencl - try to install into python's site-packages properly (cannot test it) - the ebuild does not work for me still (SANDBOX VIOLATION due to /proc/self/setgroups access) Package-Manager: Portage-2.3.28, Repoman-2.3.9
* sci-libs/tensorflow: more tweaks to use bazel build systemMartin Mokrejs2018-04-091-2/+38
| | | | | | | | | | It does not build for me and later runs in sandbox violation error. Possibly the build system could respect USE=mkl too. The autogenerated? BUILD file speaks of static libs being output instead of shared libs. It also mentions how to call linker when linking 3rd-party apps against these libs. Package-Manager: Portage-2.3.27, Repoman-2.3.9
* sci-libs/tensorflow: version bumpMartin Mokrejs2018-04-073-2/+61
| | | | | | | | The ebuild does not compile for me still, it needs more work. Credits: Rok Kralj Closes: https://github.com/gentoo/sci/issues/857 Package-Manager: Portage-2.3.27, Repoman-2.3.9
* sci-libs/mkl: drop oldMatthias Maier2018-04-033-198/+0
| | | | Package-Manager: Portage-2.3.28, Repoman-2.3.9
* sci-libs/ipp: drop oldMatthias Maier2018-04-032-29/+0
| | | | Package-Manager: Portage-2.3.28, Repoman-2.3.9
* sci-libs/ipp: version bump to 18.0.2.199Matthias Maier2018-04-032-0/+44
| | | | Package-Manager: Portage-2.3.28, Repoman-2.3.9
* sci-libs/mkl: version bump to 18.0.2.199Matthias Maier2018-04-032-0/+109
| | | | Package-Manager: Portage-2.3.28, Repoman-2.3.9
* sci-libs/trilinos: remove qt4 use flagMatthias Maier2018-04-021-3/+1
| | | | | | | | I have no idea what graphical interface is constructed when qt support is enabled but it isn't essential for trilinos at all and Trilinos doesn't support Qt5... So let's just remove that. Package-Manager: Portage-2.3.28, Repoman-2.3.9
* sci-libs/trilinos: Drop oldJustin Lecher2018-04-027-1716/+0
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.27, Repoman-2.3.9 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-libs/trilinos: Change USE=qt to qt5Justin Lecher2018-04-021-3/+3
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.27, Repoman-2.3.9
* sci-libs/tensorflow: Update metadata.xml for USE=cudaJustin Lecher2018-04-021-0/+3
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.27, Repoman-2.3.9
* sci-libs/dealii: update live ebuildMatthias Maier2018-03-192-4/+10
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-libs/trilinos: drop old versionsMatthias Maier2018-03-0110-2303/+0
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-libs/trilinos: version bump to 12.12.1Matthias Maier2018-03-014-1/+1311
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-libs/tensorflow: Add second homepage urlMartin Mokrejš2018-01-292-2/+4
| | | | | Package-Manager: Portage-2.3.20, Repoman-2.3.6 RepoMan-Options: --force
* sci-libs/tensorflow: new packageMartin Mokrejš2018-01-294-0/+68
| | | | | | | Will be needed for sci-biology/chiron, landing soon. Package-Manager: Portage-2.3.20, Repoman-2.3.6 RepoMan-Options: --force
* sci-libs/mkl: Update to new localization handlingJustin Lecher2018-01-274-308/+4
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.20, Repoman-2.3.6
* sci-libs/fast5: document what is still broken in the ebuildMartin Mokrejš2018-01-241-0/+2
| | | | Package-Manager: Portage-2.3.19, Repoman-2.3.6
* sci-libs/fast5: version bump, fix compile paths for hdf5Martin Mokrejš2018-01-243-8/+8
| | | | Package-Manager: Portage-2.3.19, Repoman-2.3.6
* sci-libs/dealii: live ebuild: use https: instead of git:Matthias Maier2017-12-261-1/+1
| | | | Package-Manager: Portage-2.3.19, Repoman-2.3.6
* Tree-clean: I do no longer maintain these ebuilds.Harald Weiner2017-12-173-55/+0
| | | | | | Closes: https://github.com/gentoo/sci/pull/812 Package-Manager: Portage-2.3.6, Repoman-2.3.1
* Update Manifests to new hashesJustin Lecher2017-12-1082-156/+156
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Second try to clean spaces in metadata.xmlJustin Lecher2017-11-1858-400/+400
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Consistently ident with tabsJustin Lecher2017-11-1897-799/+799
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-libs/dealii: update live ebuildMatthias Maier2017-10-072-3/+13
| | | | Package-Manager: Portage-2.3.8, Repoman-2.3.3
* sci-libs/gsl: bump to gsl-2.4.François Bissey2017-09-235-4/+83
| | | | | | | | | Change over to https in all ebuilds to keep repoman happy. Closes: https://github.com/gentoo/sci/pull/815 Closes: https://github.com/gentoo/sci/issues/813 Package-Manager: Portage-2.3.8, Repoman-2.3.3
* sci-libs/htslib: Remove oldDavid Seifert2017-09-025-103/+0
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* sci-libs/clblas: Remove last mentions of sci-libs/acmlDavid Seifert2017-09-023-3/+0
| | | | Package-Manager: Portage-2.3.8, Repoman-2.3.3
* sci-libs/acml: Already removed from main treeDavid Seifert2017-09-025-344/+0
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* sci-libs/openblas: USE flags of single-threaded version.Benda Xu2017-08-281-0/+2
| | | | | | | | When neither openmp nor threads USE flag is set, OpenBLAS should build a single-threaded version with make option USE_THREAD=0. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/openblas: fix DESTDIR and PREFIX for cmake directories.Benda Xu2017-08-254-12/+12
| | | | | | Closes: https://github.com/gentoo/sci/pull/725 Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/openblas: Bump to 0.2.20.François Bissey2017-08-258-73/+345
| | | | | | | | | | Clean up after fixing multilib wrapper issue. Use https to make repoman happy. Closes: https://github.com/gentoo/sci/pull/800 Bug: 617312 Package-Manager: Portage-2.3.6, Repoman-2.3.3
* sci-libs/nipype: added dependenciesHorea Christian2017-08-251-0/+3
| | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3
* sci-libs/nipy: version bumpHorea Christian2017-08-253-14/+55
| | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3
* sci-libs/nibabel: fixed indentationHorea Christian2017-08-252-17/+17
| | | | Package-Manager: Portage-2.3.8, Repoman-2.3.3
* sci-libs/dealii: update live ebuild to upstream changesMatthias Maier2017-08-142-3/+9
| | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3
* sci-libs/htslib: version bumpMartin Mokrejš2017-07-282-0/+32
| | | | | | | Keeping KEYWORDS empty because it conflicts with htslib-1.3.1 as of now unless jlec/soap proceed in some proper way. Package-Manager: Portage-2.3.6, Repoman-2.3.2
* sci-libs/trilinos: fix compilation with gcc-7Matthias Maier2017-07-142-1/+59
| | | | Package-Manager: Portage-2.3.6, Repoman-2.3.2
* sci-libs/trilinos: bugfix - change eapply_user to epatch_user for EAPI 5Matthias Maier2017-07-071-1/+1
| | | | Package-Manager: Portage-2.3.6, Repoman-2.3.2
* sci-libs/trilinos: add eapply_user to src_prepareMatthias Maier2017-07-071-0/+2
| | | | | | We'll have to migrate to EAPI 6 at some point Package-Manager: Portage-2.3.6, Repoman-2.3.2
* sci-libs/libmaus: Bump to EAPI 6Justin Lecher2017-07-072-3/+3
| | | | | Package-Manager: Portage-2.3.6-prefix, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-libs/atlas: version bump to 3.11.39Gergely Nagy2017-06-273-0/+300
| | | | | | Patch from upstream is required to build the shared library: https://sourceforge.net/p/math-atlas/bugs/260/ Closes: https://github.com/gentoo/sci/pull/794
* sci-libs/atlas: Sanitize default USE combinationJustin Lecher2017-06-263-4/+4
| | | | | | | Helps sorting out #794 Package-Manager: Portage-2.3.6-prefix, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-libs/itk: bump to 4.12.0tharvik2017-06-232-0/+137
| | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1 Closes: https://github.com/gentoo/sci/pull/792