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| author |   David Seifert <soap@gentoo.org> | 2016-10-09 14:44:16 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2016-10-09 17:14:18 +0200 |
| commit | c0a145c569b658ac97b0addecdee386768d4bb16 (patch) | |
| tree | f1de5e5e39a8ee9cbfaafe27e427cc25f47fcf96 /sci-biology/hmmer/hmmer-3.1_beta2.ebuild | |
| parent | app-crypt/ccid: version bump and remove older. (diff) | |
| download | gentoo-c0a145c569b658ac97b0addecdee386768d4bb16.tar.gz gentoo-c0a145c569b658ac97b0addecdee386768d4bb16.tar.bz2 gentoo-c0a145c569b658ac97b0addecdee386768d4bb16.zip | |
sci-biology/hmmer: Version bump to 3.1_beta2
* EAPI=6
* Make perl shebangs portable
* Install headers into 'hmmer3' subdir
Package-Manager: portage-2.3.1
Diffstat (limited to 'sci-biology/hmmer/hmmer-3.1_beta2.ebuild')
| -rw-r--r-- | sci-biology/hmmer/hmmer-3.1_beta2.ebuild | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/sci-biology/hmmer/hmmer-3.1_beta2.ebuild b/sci-biology/hmmer/hmmer-3.1_beta2.ebuild new file mode 100644 index 000000000000..d893cb3a3b84 --- /dev/null +++ b/sci-biology/hmmer/hmmer-3.1_beta2.ebuild @@ -0,0 +1,49 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +MY_PV="${PV/_beta/b}" + +DESCRIPTION="Sequence analysis using profile hidden Markov models" +HOMEPAGE="http://hmmer.org/" +SRC_URI="http://eddylab.org/software/${PN}3/${MY_PV}/hmmer-${MY_PV}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +IUSE="altivec cpu_flags_x86_sse gsl mpi test +threads" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos" + +RDEPEND=" + mpi? ( virtual/mpi ) + gsl? ( sci-libs/gsl:= )" +DEPEND="${RDEPEND} + test? ( dev-lang/perl )" + +S="${WORKDIR}/${PN}-${MY_PV}" +PATCHES=( + "${FILESDIR}/${PN}-3.1_beta2-fix-perl-shebangs.patch" + "${FILESDIR}/${PN}-3.1_beta2-fix-header-install-path.patch" +) + +src_configure() { + # make build verbose, bug 429308 + export V=1 + + econf \ + --disable-pic \ + $(use_enable altivec vmx) \ + $(use_enable cpu_flags_x86_sse sse) \ + $(use_enable mpi) \ + $(use_enable threads) \ + $(use_with gsl) +} + +src_install() { + default + dodoc Userguide.pdf + + insinto /usr/share/${PN} + doins -r tutorial +} |