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| author |   Jakov Smolić <jsmolic@gentoo.org> | 2023-01-27 11:47:43 +0100 |
|---|---|---|
| committer | Jakov Smolić <jsmolic@gentoo.org> | 2023-01-27 12:07:05 +0100 |
| commit | 4f304f100d52a4c4d662a3a0bc56ee756b5f2f23 (patch) | |
| tree | f2b4dbc5abadee76366a4192a7e859797ad3ea51 /sci-libs | |
| parent | sci-libs/libmems: treeclean (diff) | |
| download | gentoo-4f304f100d52a4c4d662a3a0bc56ee756b5f2f23.tar.gz gentoo-4f304f100d52a4c4d662a3a0bc56ee756b5f2f23.tar.bz2 gentoo-4f304f100d52a4c4d662a3a0bc56ee756b5f2f23.zip | |
sci-libs/libgenome: treeclean
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
Diffstat (limited to 'sci-libs')
| -rw-r--r-- | sci-libs/libgenome/Manifest | 1 | ||||
| -rw-r--r-- | sci-libs/libgenome/files/libgenome-1.3-fix-c++14.patch | 30 | ||||
| -rw-r--r-- | sci-libs/libgenome/libgenome-1.3-r1.ebuild | 39 | ||||
| -rw-r--r-- | sci-libs/libgenome/metadata.xml | 8 |
4 files changed, 0 insertions, 78 deletions
diff --git a/sci-libs/libgenome/Manifest b/sci-libs/libgenome/Manifest deleted file mode 100644 index 68624fb9fdc2..000000000000 --- a/sci-libs/libgenome/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST libgenome-1.3-r1.tar.bz2 128503 BLAKE2B d64784f8b220fa5bf32a4e22b8884755e38ce03fa9d17fc11cd79dfe662051f5518852631bd5a081ab52f0139434d5571d0dde49ae873297cb52a9153949e478 SHA512 0fd1895d9ea1ac75e4efaeae9abd5241193dba17f91426a5be7b244331ac7939c37d51bb08f8378d64a96573ad38b39e2583a928aadf9421e8b5c17fe217dfd4 diff --git a/sci-libs/libgenome/files/libgenome-1.3-fix-c++14.patch b/sci-libs/libgenome/files/libgenome-1.3-fix-c++14.patch deleted file mode 100644 index ffe30ef91fa2..000000000000 --- a/sci-libs/libgenome/files/libgenome-1.3-fix-c++14.patch +++ /dev/null @@ -1,30 +0,0 @@ -Fix building with C++14, which errors out due to collisions with internal abs() function. -See also: https://bugs.gentoo.org/show_bug.cgi?id=594372 - ---- a/libGenome/gnDefs.h -+++ b/libGenome/gnDefs.h -@@ -175,13 +175,6 @@ -
- #define CONTIG_SECTION_SIZE 3
-
--// some compilers don't have abs() for 64 bit ints
--#if (defined(__GNUG__) && ( __GNUC__ <= 2 )) || defined(__INTEL_COMPILER) || (defined _MSC_VER && defined __cplusplus)
--
--int64 abs( int64 a );
--
--#endif
--
- #ifdef __cplusplus
- namespace genome {
- #endif
---- a/libGenome/Makefile.am -+++ b/libGenome/Makefile.am -@@ -29,7 +29,7 @@ - gnGenomeSpec.cpp gnLocation.cpp \ - gnRAWSource.cpp gnBaseFeature.cpp gnSEQSource.cpp gnSequence.cpp \ - gnContigSpec.cpp gnSourceHeader.cpp gnException.cpp \ --gnFastTranslator.cpp gnPosSpecificTranslator.cpp gnDefs.cpp -+gnFastTranslator.cpp gnPosSpecificTranslator.cpp - - library_includedir=$(includedir)/$(GENERIC_LIBRARY_NAME)-$(GENERIC_API_VERSION)/$(GENERIC_LIBRARY_NAME) - diff --git a/sci-libs/libgenome/libgenome-1.3-r1.ebuild b/sci-libs/libgenome/libgenome-1.3-r1.ebuild deleted file mode 100644 index 03f05c029ad0..000000000000 --- a/sci-libs/libgenome/libgenome-1.3-r1.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit autotools - -DESCRIPTION="Library for sci-biology/mauve" -HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/" -SRC_URI="mirror://gentoo/${PF}.tar.bz2" - -LICENSE="GPL-2" -SLOT="0" -IUSE="doc static-libs" -KEYWORDS="~amd64 ~x86" - -DEPEND="doc? ( app-doc/doxygen )" -RDEPEND="" - -PATCHES=( "${FILESDIR}/${PN}-1.3-fix-c++14.patch" ) - -src_prepare() { - default - rm libGenome/gnDefs.cpp || die - eautoreconf -} - -src_configure() { - econf \ - --enable-shared \ - $(use_enable static-libs static) -} - -src_install() { - default - - # package provides .pc files - find "${D}" -name '*.la' -delete || die -} diff --git a/sci-libs/libgenome/metadata.xml b/sci-libs/libgenome/metadata.xml deleted file mode 100644 index bdabd1d83788..000000000000 --- a/sci-libs/libgenome/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> |