dev-perl/Bio-DB-HTS: -r1 bump for EAPI7 + toolchain love

- EAPI7
- Ensure not breaking when LD=!ccld
- Ensure passing CFLAGS to make/compiler
- Populate more remote-id's in metadata.xml

Package-Manager: Portage-2.3.100, Repoman-2.3.22
Signed-off-by: Kent Fredric <kentnl@gentoo.org>

2 files changed, 74 insertions, 0 deletions

diff --git a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0-r1.ebuild b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0-r1.ebuild
new file mode 100644
index 000000000000..dcae1156e881
--- /dev/null
+++ b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0-r1.ebuild
@@ -0,0 +1,47 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DIST_AUTHOR=AVULLO
+DIST_VERSION=3.01
+
+inherit perl-module
+
+DESCRIPTION="Perl bindings for sci-libs/htslib"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+RESTRICT="!test? ( test )"
+
+RDEPEND="
+	sci-biology/bioperl
+	sci-libs/htslib:=
+"
+DEPEND="
+	dev-perl/Module-Build
+	sci-libs/htslib:=
+"
+BDEPEND="${RDEPEND}
+	dev-perl/Module-Build
+	test? ( dev-perl/Test-LeakTrace )"
+
+PATCHES=(
+	"${FILESDIR}/2.11-build_env_ldflags.patch"
+	"${FILESDIR}/2.11-build_split_htslib_opts.patch"
+)
+
+src_configure() {
+	local myconf="--htslib-includedir=${EPREFIX}/usr/include/htslib --htslib-libdir=${EPREFIX}/usr/$(get_libdir)"
+	unset LD
+	if [[ -n "${CCLD}" ]]; then
+		export LD="${CCLD}"
+	fi
+	perl-module_src_configure
+}
+src_compile() {
+	./Build --config optimize="${CFLAGS}" build || die
+}
diff --git a/dev-perl/Bio-DB-HTS/metadata.xml b/dev-perl/Bio-DB-HTS/metadata.xml
index 95abbb699ad4..126683a7c28f 100644
--- a/dev-perl/Bio-DB-HTS/metadata.xml
+++ b/dev-perl/Bio-DB-HTS/metadata.xml
@@ -13,5 +13,32 @@
 		<remote-id type="github">Ensembl/Bio-DB-HTS</remote-id>
 		<remote-id type="cpan">Bio-DB-HTS</remote-id>
 		<remote-id type="cpan-module">Bio::DB::HTS</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::AlignWrapper</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Alignment</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Constants</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Fai</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Faidx</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::FetchIterator</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Kseq</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Kseq::Record</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Pileup</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::PileupWrapper</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Query</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::ReadIterator</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Segment</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Segment::Iterator</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::SplitAlignmentPart</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Tabix</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Tabix::Iterator</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::Target</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::VCF</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::VCF::Header</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::VCF::HeaderPtr</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::VCF::Iterator</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::VCF::Row</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::VCF::RowPtr</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTS::VCF::Sweep</remote-id>
+		<remote-id type="cpan-module">Bio::DB::HTSfile</remote-id>
+		<remote-id type="cpan-module">Bio::SeqFeature::HTSCoverage</remote-id>
 	</upstream>
 </pkgmetadata>