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authorRepository mirror & CI <repomirrorci@gentoo.org>2022-03-24 04:25:58 +0000
committerRepository mirror & CI <repomirrorci@gentoo.org>2022-03-24 04:25:58 +0000
commitf653b8a57c813e776d1729844d400c21c18773ce (patch)
tree1f9c97c295c0af19e1cbea91324b27e55fe10932 /metadata/md5-cache/sci-biology
parentMerge updates from master (diff)
downloadgentoo-f653b8a57c813e776d1729844d400c21c18773ce.tar.gz
gentoo-f653b8a57c813e776d1729844d400c21c18773ce.tar.bz2
gentoo-f653b8a57c813e776d1729844d400c21c18773ce.zip
2022-03-24 04:25:45 UTC
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/GBrowse-2.48-r12
-rw-r--r--metadata/md5-cache/sci-biology/HTSeq-0.12.42
-rw-r--r--metadata/md5-cache/sci-biology/HTSeq-99992
-rw-r--r--metadata/md5-cache/sci-biology/abyss-2.3.42
-rw-r--r--metadata/md5-cache/sci-biology/amap-2.2-r42
-rw-r--r--metadata/md5-cache/sci-biology/augustus-3.4.0-r12
-rw-r--r--metadata/md5-cache/sci-biology/bamtools-2.5.22
-rw-r--r--metadata/md5-cache/sci-biology/bamtools-99992
-rw-r--r--metadata/md5-cache/sci-biology/bcftools-1.132
-rw-r--r--metadata/md5-cache/sci-biology/bcftools-1.152
-rw-r--r--metadata/md5-cache/sci-biology/bedtools-2.30.02
-rw-r--r--metadata/md5-cache/sci-biology/bfast-0.7.0a2
-rw-r--r--metadata/md5-cache/sci-biology/biogrep-1.0-r22
-rw-r--r--metadata/md5-cache/sci-biology/biopandas-0.2.72
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-1.6.9-r12
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r12
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r12
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r12
-rw-r--r--metadata/md5-cache/sci-biology/biopython-1.792
-rw-r--r--metadata/md5-cache/sci-biology/bowtie-2.4.42
-rw-r--r--metadata/md5-cache/sci-biology/clustal-omega-1.2.42
-rw-r--r--metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r12
-rw-r--r--metadata/md5-cache/sci-biology/emboss-6.6.0-r22
-rw-r--r--metadata/md5-cache/sci-biology/eugene-4.1d2
-rw-r--r--metadata/md5-cache/sci-biology/exonerate-2.2.0-r22
-rw-r--r--metadata/md5-cache/sci-biology/express-1.5.12
-rw-r--r--metadata/md5-cache/sci-biology/fasttree-2.1.112
-rw-r--r--metadata/md5-cache/sci-biology/fastx_toolkit-0.0.142
-rw-r--r--metadata/md5-cache/sci-biology/iedera-1.05-r12
-rw-r--r--metadata/md5-cache/sci-biology/kallisto-0.46.22
-rw-r--r--metadata/md5-cache/sci-biology/libgtextutils-0.6.12
-rw-r--r--metadata/md5-cache/sci-biology/maq-0.7.1-r22
-rw-r--r--metadata/md5-cache/sci-biology/maqview-0.2.5-r32
-rw-r--r--metadata/md5-cache/sci-biology/mcl-14.1372
-rw-r--r--metadata/md5-cache/sci-biology/mothur-1.27.0-r12
-rw-r--r--metadata/md5-cache/sci-biology/newick-utils-1.6-r12
-rw-r--r--metadata/md5-cache/sci-biology/pysam-0.17.02
-rw-r--r--metadata/md5-cache/sci-biology/seqan-2.4.0-r12
-rw-r--r--metadata/md5-cache/sci-biology/seqan-3.1.02
-rw-r--r--metadata/md5-cache/sci-biology/treeviewx-0.5.1-r32
-rw-r--r--metadata/md5-cache/sci-biology/uchime-4.2.402
-rw-r--r--metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r12
-rw-r--r--metadata/md5-cache/sci-biology/vcftools-0.1.142
-rw-r--r--metadata/md5-cache/sci-biology/vcftools-0.1.162
-rw-r--r--metadata/md5-cache/sci-biology/yass-1.14-r22
59 files changed, 59 insertions, 59 deletions
diff --git a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
index f8d2415f2eb3..6f417c75d1ab 100644
--- a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
+++ b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
@@ -10,5 +10,5 @@ LICENSE=|| ( Artistic GPL-1+ )
RDEPEND=!<sci-biology/GBrowse-2.44-r1 >=sci-biology/bioperl-1.6.9 >=dev-perl/Bio-Graphics-2.09 >=dev-perl/GD-2.07 >=dev-perl/CGI-Session-4.02 dev-perl/IO-String dev-perl/JSON dev-perl/libwww-perl dev-perl/Statistics-Descriptive !minimal? ( dev-perl/Bio-Das >=dev-perl/Bio-SamTools-1.20 dev-perl/Crypt-SSLeay dev-perl/DB_File-Lock dev-perl/DBI mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) sqlite? ( dev-perl/DBD-SQLite ) dev-perl/FCGI dev-perl/File-NFSLock dev-perl/GD-SVG dev-perl/Net-OpenID-Consumer dev-perl/Net-SMTP-SSL ) dev-lang/perl:=[-build(-)] app-admin/webapp-config
SLOT=0
SRC_URI=mirror://cpan/authors/id/L/LD/LDS/GBrowse-2.48.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff multiprocessing 61c959fc55c15c00bbb1079d6a71370b unpacker 2e16b7d5aafeda049669c53c05ce03c9 perl-functions fea344a91ebf37efadf172c6a3de5a72 perl-module bd9574a79c5f0a347a9ea3db5ad9ca72 webapp 60f2eb31dec733d05e8114cc078ebc33
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff multiprocessing 61c959fc55c15c00bbb1079d6a71370b unpacker 697382d119fd3d195f110b7979184285 perl-functions fea344a91ebf37efadf172c6a3de5a72 perl-module 8eed4e2982026c684ff7c19cd4c88ed0 webapp cbf94d7383f416c5ead4634aa89916a9
_md5_=088b19055886b41078acab0f96df204a
diff --git a/metadata/md5-cache/sci-biology/HTSeq-0.12.4 b/metadata/md5-cache/sci-biology/HTSeq-0.12.4
index 253e38cee075..e1b500eb0f60 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-0.12.4
+++ b/metadata/md5-cache/sci-biology/HTSeq-0.12.4
@@ -12,5 +12,5 @@ RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-
REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 )
SLOT=0
SRC_URI=https://github.com/htseq/htseq/archive/release_0.12.4.tar.gz -> HTSeq-0.12.4.tar.gz
-_eclasses_=multibuild d79bd5b4bc4edcb1f5bc19591f8d4714 multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 eapi8-dosym cd7d420bb5be5ee079f27239ce76b8f5 python-utils-r1 d3d7da5aff94a677154819e0cb95ee36 python-r1 bcd408f1e4a9669198ef4dfcd5ab8696 distutils-r1 d540d96908dd5622f3dfa41d167e632d
+_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 eapi8-dosym cd7d420bb5be5ee079f27239ce76b8f5 python-utils-r1 dfa3a38467793e97fcf791b156510654 python-r1 8638751691200e941f26fe0ac3aef1d1 distutils-r1 e91901adfcf0640d2daa4dc863ff5377
_md5_=ae9941d3e3234244619fdcb2b46c8e90
diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999
index 264bef5b7073..11cb016c2066 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-9999
+++ b/metadata/md5-cache/sci-biology/HTSeq-9999
@@ -11,5 +11,5 @@ PROPERTIES=live
RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.12_p1-r1:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.9-r1:3.9 )
REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 )
SLOT=0
-_eclasses_=multibuild d79bd5b4bc4edcb1f5bc19591f8d4714 multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 eapi8-dosym cd7d420bb5be5ee079f27239ce76b8f5 python-utils-r1 d3d7da5aff94a677154819e0cb95ee36 python-r1 bcd408f1e4a9669198ef4dfcd5ab8696 distutils-r1 d540d96908dd5622f3dfa41d167e632d git-r3 cc875b0c1e9b3bdac1af0f82f3ba29da
+_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 eapi8-dosym cd7d420bb5be5ee079f27239ce76b8f5 python-utils-r1 dfa3a38467793e97fcf791b156510654 python-r1 8638751691200e941f26fe0ac3aef1d1 distutils-r1 e91901adfcf0640d2daa4dc863ff5377 git-r3 b9ac6f96d2a88edb5b351df634dc5e53
_md5_=ae9941d3e3234244619fdcb2b46c8e90
diff --git a/metadata/md5-cache/sci-biology/abyss-2.3.4 b/metadata/md5-cache/sci-biology/abyss-2.3.4
index 8d60160691cc..97d751c0c4b6 100644
--- a/metadata/md5-cache/sci-biology/abyss-2.3.4
+++ b/metadata/md5-cache/sci-biology/abyss-2.3.4
@@ -11,5 +11,5 @@ LICENSE=GPL-3
RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) sys-cluster/openmpi dev-db/sqlite:3
SLOT=0
SRC_URI=https://github.com/bcgsc/abyss/archive/2.3.4.tar.gz -> abyss-2.3.4.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=9a708eff89b221551fbb0bcc299ccfa3
diff --git a/metadata/md5-cache/sci-biology/amap-2.2-r4 b/metadata/md5-cache/sci-biology/amap-2.2-r4
index b3a99b9b9f77..cad709ac792a 100644
--- a/metadata/md5-cache/sci-biology/amap-2.2-r4
+++ b/metadata/md5-cache/sci-biology/amap-2.2-r4
@@ -10,5 +10,5 @@ LICENSE=GPL-2
RDEPEND=java? ( >=virtual/jre-1.8:* ) java? ( >=dev-java/java-config-2.2.0-r3 )
SLOT=0
SRC_URI=http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz
-_eclasses_=eapi7-ver 1a0a60ad07c8b32d2faba2d085dc0f24 desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff versionator d3fb3ba33acc3bbbdc4d7970227c100d java-utils-2 fe178a2da6b16798a2363acc5543dffa java-pkg-opt-2 e5029f11aa150c447c7e006015f84356 java-ant-2 262d853e2dd1056dc103b953dfc113b9
+_eclasses_=eapi7-ver 1a0a60ad07c8b32d2faba2d085dc0f24 desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff versionator d3fb3ba33acc3bbbdc4d7970227c100d java-utils-2 5faae27f317e090a61b74f53f5e0cbc9 java-pkg-opt-2 a71433e535af8faae0c0f6c861a32054 java-ant-2 5cf479aa9e0ac9cc55899f2762c2aaa0
_md5_=857434504156a8892f1335babe24f9f0
diff --git a/metadata/md5-cache/sci-biology/augustus-3.4.0-r1 b/metadata/md5-cache/sci-biology/augustus-3.4.0-r1
index b554a3f513a6..0ff2d616ed28 100644
--- a/metadata/md5-cache/sci-biology/augustus-3.4.0-r1
+++ b/metadata/md5-cache/sci-biology/augustus-3.4.0-r1
@@ -11,5 +11,5 @@ LICENSE=Artistic
RDEPEND=dev-db/sqlite:3 dev-db/mysql++ dev-db/mysql-connector-c dev-libs/boost:= sci-biology/bamtools sci-biology/samtools:0 sci-libs/gsl sci-libs/htslib sci-libs/suitesparse sci-mathematics/lpsolve sys-libs/zlib
SLOT=0
SRC_URI=https://github.com/Gaius-Augustus/Augustus/archive/refs/tags/v3.4.0.tar.gz -> augustus-3.4.0.tar.gz
-_eclasses_=docs 7c38d94fa7c1b4235fe571dc09e018df
+_eclasses_=docs 8ed2a8a28ff109e7a3582c9abb7fe327
_md5_=f3105666a60b7910f0197729974b53d5
diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.2 b/metadata/md5-cache/sci-biology/bamtools-2.5.2
index 95c345028bf8..3d57b614408e 100644
--- a/metadata/md5-cache/sci-biology/bamtools-2.5.2
+++ b/metadata/md5-cache/sci-biology/bamtools-2.5.2
@@ -10,5 +10,5 @@ LICENSE=MIT
RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
SLOT=0/2.5.2
SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.2.tar.gz -> bamtools-2.5.2.tar.gz
-_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 4f29a8b760a594a212abe9c2ba957c31 cmake 9f12546ab831b81c615d90e6b9e34e68
+_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils fef481272d4a8e136a7d8a0fb1329384 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 3c38df051095289667b6f09ebd0cc149
_md5_=efdfbdbf4181a018ee9965d5c16be71f
diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999
index 255d751fffc5..87300f342950 100644
--- a/metadata/md5-cache/sci-biology/bamtools-9999
+++ b/metadata/md5-cache/sci-biology/bamtools-9999
@@ -9,5 +9,5 @@ LICENSE=MIT
PROPERTIES=live
RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
SLOT=0/9999
-_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 4f29a8b760a594a212abe9c2ba957c31 cmake 9f12546ab831b81c615d90e6b9e34e68 git-r3 cc875b0c1e9b3bdac1af0f82f3ba29da
+_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils fef481272d4a8e136a7d8a0fb1329384 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 3c38df051095289667b6f09ebd0cc149 git-r3 b9ac6f96d2a88edb5b351df634dc5e53
_md5_=a2299dc6ca850c1c25582656d7586681
diff --git a/metadata/md5-cache/sci-biology/bcftools-1.13 b/metadata/md5-cache/sci-biology/bcftools-1.13
index 77df2e6d3950..00134225ff9c 100644
--- a/metadata/md5-cache/sci-biology/bcftools-1.13
+++ b/metadata/md5-cache/sci-biology/bcftools-1.13
@@ -12,5 +12,5 @@ RDEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[py
REQUIRED_USE=^^ ( python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 )
SLOT=0
SRC_URI=https://github.com/samtools/bcftools/releases/download/1.13/bcftools-1.13.tar.bz2
-_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 python-utils-r1 d3d7da5aff94a677154819e0cb95ee36 python-single-r1 3c5721adc30f98c39739c5970a4762d8
+_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 python-utils-r1 dfa3a38467793e97fcf791b156510654 python-single-r1 a5747fe6dc0651d95cb78eddd5e160a8
_md5_=a7d6aa14a25dfbfd5fa4547dea06070c
diff --git a/metadata/md5-cache/sci-biology/bcftools-1.15 b/metadata/md5-cache/sci-biology/bcftools-1.15
index 2f50403acedf..847dce7a7961 100644
--- a/metadata/md5-cache/sci-biology/bcftools-1.15
+++ b/metadata/md5-cache/sci-biology/bcftools-1.15
@@ -12,5 +12,5 @@ RDEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[py
REQUIRED_USE=^^ ( python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 )
SLOT=0
SRC_URI=https://github.com/samtools/bcftools/releases/download/1.15/bcftools-1.15.tar.bz2
-_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 python-utils-r1 d3d7da5aff94a677154819e0cb95ee36 python-single-r1 3c5721adc30f98c39739c5970a4762d8
+_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 python-utils-r1 dfa3a38467793e97fcf791b156510654 python-single-r1 a5747fe6dc0651d95cb78eddd5e160a8
_md5_=2b2091a43195aec58a417e5334bfa2fc
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.30.0 b/metadata/md5-cache/sci-biology/bedtools-2.30.0
index 6cb38a3e1bda..ae76cabd90fe 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.30.0
+++ b/metadata/md5-cache/sci-biology/bedtools-2.30.0
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools-2.30.0.tar.gz
-_eclasses_=eapi8-dosym cd7d420bb5be5ee079f27239ce76b8f5 multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 python-utils-r1 d3d7da5aff94a677154819e0cb95ee36 python-any-r1 54666a8fa603df658d9284845fc3d755
+_eclasses_=eapi8-dosym cd7d420bb5be5ee079f27239ce76b8f5 multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 python-utils-r1 dfa3a38467793e97fcf791b156510654 python-any-r1 9006edf4b9c90f9ba1dc9ea9fee1b0bd
_md5_=14bf1e3697276975f4e8b47a297b1bf5
diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a
index 6b931106f4f5..75830b6a823c 100644
--- a/metadata/md5-cache/sci-biology/bfast-0.7.0a
+++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a
@@ -11,5 +11,5 @@ RDEPEND=dev-perl/XML-Simple
RESTRICT=test
SLOT=0
SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=e64abecddb86e9860edc80410f299d83
diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 b/metadata/md5-cache/sci-biology/biogrep-1.0-r2
index 6867155b727e..ac9301d28c4b 100644
--- a/metadata/md5-cache/sci-biology/biogrep-1.0-r2
+++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r2
@@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86
LICENSE=GPL-2
SLOT=0
SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf )
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=9731727dae2a2514bcaa486b0059272e
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.7 b/metadata/md5-cache/sci-biology/biopandas-0.2.7
index e2e426c9fdb5..bb200ec819b5 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.2.7
+++ b/metadata/md5-cache/sci-biology/biopandas-0.2.7
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 )
RESTRICT=!test? ( test ) !test? ( test )
SLOT=0
SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.7.tar.gz
-_eclasses_=multibuild d79bd5b4bc4edcb1f5bc19591f8d4714 multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 eapi8-dosym cd7d420bb5be5ee079f27239ce76b8f5 python-utils-r1 d3d7da5aff94a677154819e0cb95ee36 python-r1 bcd408f1e4a9669198ef4dfcd5ab8696 distutils-r1 d540d96908dd5622f3dfa41d167e632d
+_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 eapi8-dosym cd7d420bb5be5ee079f27239ce76b8f5 python-utils-r1 dfa3a38467793e97fcf791b156510654 python-r1 8638751691200e941f26fe0ac3aef1d1 distutils-r1 e91901adfcf0640d2daa4dc863ff5377
_md5_=6e4b8600d4f3c3ac26b099a9c4577ca0
diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-1.6.9-r1
index 614d9c211632..26928d09bd5f 100644
--- a/metadata/md5-cache/sci-biology/bioperl-1.6.9-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9-r1
@@ -14,5 +14,5 @@ REQUIRED_USE=minimal? ( !graphviz )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz
-_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b perl-functions fea344a91ebf37efadf172c6a3de5a72 readme.gentoo-r1 eebd0164fe61f4f7b64a683e83fdceb1 perl-module bd9574a79c5f0a347a9ea3db5ad9ca72
+_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b perl-functions fea344a91ebf37efadf172c6a3de5a72 readme.gentoo-r1 b776ad4b42f564c406a95c41ccb42c55 perl-module 8eed4e2982026c684ff7c19cd4c88ed0
_md5_=e2bc1ba3ce7d3071e3bfff1ff59b93fa
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1
index d74bc37f22cd..d24e6f3df70c 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1
@@ -11,5 +11,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/
RESTRICT=test
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz
-_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b perl-functions fea344a91ebf37efadf172c6a3de5a72 perl-module bd9574a79c5f0a347a9ea3db5ad9ca72
+_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b perl-functions fea344a91ebf37efadf172c6a3de5a72 perl-module 8eed4e2982026c684ff7c19cd4c88ed0
_md5_=014aeb00c18e1619bc28c3cc890bf145
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r1
index 74643ddc4804..abaa7b4a141f 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r1
@@ -12,5 +12,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=
RESTRICT=test !test? ( test )
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz
-_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b perl-functions fea344a91ebf37efadf172c6a3de5a72 readme.gentoo-r1 eebd0164fe61f4f7b64a683e83fdceb1 perl-module bd9574a79c5f0a347a9ea3db5ad9ca72
+_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b perl-functions fea344a91ebf37efadf172c6a3de5a72 readme.gentoo-r1 b776ad4b42f564c406a95c41ccb42c55 perl-module 8eed4e2982026c684ff7c19cd4c88ed0
_md5_=062cfc681671741bdf0ce203cd9f0854
diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r1
index 0eabdb037c92..4f8690d1e074 100644
--- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r1
@@ -12,5 +12,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 !minimal? ( dev-perl/Algorithm-Diff dev-perl
RESTRICT=test !test? ( test )
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz
-_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b perl-functions fea344a91ebf37efadf172c6a3de5a72 readme.gentoo-r1 eebd0164fe61f4f7b64a683e83fdceb1 perl-module bd9574a79c5f0a347a9ea3db5ad9ca72
+_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b perl-functions fea344a91ebf37efadf172c6a3de5a72 readme.gentoo-r1 b776ad4b42f564c406a95c41ccb42c55 perl-module 8eed4e2982026c684ff7c19cd4c88ed0
_md5_=89a50a53d48e4dddb7f36a35c0407fdb
diff --git a/metadata/md5-cache/sci-biology/biopython-1.79 b/metadata/md5-cache/sci-biology/biopython-1.79
index 54be6bba5ff9..a727b7333ceb 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.79
+++ b/metadata/md5-cache/sci-biology/biopython-1.79
@@ -12,5 +12,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python
REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 )
SLOT=0
SRC_URI=mirror://pypi/b/biopython/biopython-1.79.tar.gz
-_eclasses_=multibuild d79bd5b4bc4edcb1f5bc19591f8d4714 multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 python-utils-r1 d3d7da5aff94a677154819e0cb95ee36 python-r1 bcd408f1e4a9669198ef4dfcd5ab8696 distutils-r1 d540d96908dd5622f3dfa41d167e632d optfeature 30ce9dec2b8943338c9b015bd32bac6a
+_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 python-utils-r1 dfa3a38467793e97fcf791b156510654 python-r1 8638751691200e941f26fe0ac3aef1d1 distutils-r1 e91901adfcf0640d2daa4dc863ff5377 optfeature d524f291c80f9d21ad80fe978e3ca760
_md5_=4e2a43ec127b152970bd1c43306e9418
diff --git a/metadata/md5-cache/sci-biology/bowtie-2.4.4 b/metadata/md5-cache/sci-biology/bowtie-2.4.4
index 13883988ac93..1f7ab8bee57d 100644
--- a/metadata/md5-cache/sci-biology/bowtie-2.4.4
+++ b/metadata/md5-cache/sci-biology/bowtie-2.4.4
@@ -12,5 +12,5 @@ RDEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.12_p1-r1:3.8 ) p
REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 )
SLOT=2
SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.4.4/bowtie2-2.4.4-source.zip
-_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 python-utils-r1 d3d7da5aff94a677154819e0cb95ee36 python-single-r1 3c5721adc30f98c39739c5970a4762d8
+_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 python-utils-r1 dfa3a38467793e97fcf791b156510654 python-single-r1 a5747fe6dc0651d95cb78eddd5e160a8
_md5_=a169406c93e64d9cae6cbb8ad262f62b
diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
index 10402b356f4a..4c75d6dbcbe2 100644
--- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
+++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
@@ -10,5 +10,5 @@ LICENSE=GPL-2
RDEPEND=dev-libs/argtable
SLOT=0
SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=9ade45d2e283bc5fcc7eef16725e18ae
diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1
index e06a27ee6788..2d1beb0fbbf4 100644
--- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=56469e1c3bb7c4baac8ad99638b59ff0
diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1
index 3cc87f1ca348..a17a02b49afc 100644
--- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=864a13621791118f794da4601dcde749
diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1
index 01d26cbf7cfe..4068989b44fb 100644
--- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=af29c98cab7134ba05c6d874e37d95dc
diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1
index efd3de06aae7..412fda193bf4 100644
--- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=677a5e171c80e94969c1ab9c0b55e283
diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1
index e221fc2f5aa2..bc430d549c2b 100644
--- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=e0ca10c2776835b0cd20c1b0f0721a1a
diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1
index 3519d8f1b25b..a25363fc1c56 100644
--- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=a33d45b5be798e7ebfcef8c59a300c88
diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1
index 3424936d8b70..d9c1ab3f30f9 100644
--- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=95026ca22c2bacedf52a70b4428e7753
diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1
index 1ab333858510..9c10a6fa211c 100644
--- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=fb64fb071ec661ab550e0b33bc78b536
diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1
index af0b41dcd735..87bcaa8baded 100644
--- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=06b3cb4ecb53ada6b96c0f8fe91680e9
diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1
index 0c8af890d58b..5bee302eec23 100644
--- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=sys-libs/ncurses:= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=b6d66fbfe89f6c64f635551357dc90f4
diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1
index 99a10ac7892b..0b12c9d22293 100644
--- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 free-noncomm
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=93c762366f9cfe8fbfdffd0fdc0483d5
diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1
index 5efaff339bbb..30bf34c6c4a2 100644
--- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=193e23282bfd7f7751d7e37988a0ec44
diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1
index 0a7c6a7f7c4f..eec2f0cbf6ce 100644
--- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=c54138383c80476f9d515e5e2a33acaf
diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1
index 0e9ba23b1614..45b851f1b337 100644
--- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=30ddf1c7471e11d692477ffa5a3a9956
diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1
index ac7b2a10089b..48f0c59203e1 100644
--- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a
_md5_=ba0cdfe4fa4ef35b15cb45a53f81f3b7
diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r2 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r2
index a5c377a3341c..f09e3f291cfc 100644
--- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r2
+++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r2
@@ -12,5 +12,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci
RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz https://dev.gentoo.org/~soap/distfiles/emboss-6.6.0-patches-r1.tar.xz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 f814fbb5ffa5d098b607eeea7f80e76a readme.gentoo-r1 eebd0164fe61f4f7b64a683e83fdceb1
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 emboss-r3 ed4c0b270092039c992b771a26ca322a readme.gentoo-r1 b776ad4b42f564c406a95c41ccb42c55
_md5_=9856dbbe227d34ba8fd5a46c30dc912f
diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d b/metadata/md5-cache/sci-biology/eugene-4.1d
index 7fe936ac7ba0..ab63cb1e18e3 100644
--- a/metadata/md5-cache/sci-biology/eugene-4.1d
+++ b/metadata/md5-cache/sci-biology/eugene-4.1d
@@ -10,5 +10,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:0=
RESTRICT=test
SLOT=0
SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=683d1e7f9daeda6cd20b92117330ea81
diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
index 2c4c55a6bd90..aaed92956cda 100644
--- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
+++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
@@ -12,5 +12,5 @@ REQUIRED_USE=test? ( utils )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=05c99b447503c7a3fae4594cd126939a
diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1
index 914aa14e608e..47e42ec8c0cc 100644
--- a/metadata/md5-cache/sci-biology/express-1.5.1
+++ b/metadata/md5-cache/sci-biology/express-1.5.1
@@ -10,5 +10,5 @@ LICENSE=Artistic
RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib
SLOT=0
SRC_URI=https://pachterlab.github.io/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz
-_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 4f29a8b760a594a212abe9c2ba957c31 cmake 9f12546ab831b81c615d90e6b9e34e68
+_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils fef481272d4a8e136a7d8a0fb1329384 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 3c38df051095289667b6f09ebd0cc149
_md5_=b4fcbc714ea460615318f4baa4bc347a
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.11 b/metadata/md5-cache/sci-biology/fasttree-2.1.11
index 09b3d8cfad0e..51a0485ea4a3 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.11
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.11
@@ -10,5 +10,5 @@ LICENSE=GPL-2
REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
SLOT=0
SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.11.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.11.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.11.tar.gz
-_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 4f29a8b760a594a212abe9c2ba957c31 cmake 9f12546ab831b81c615d90e6b9e34e68
+_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils fef481272d4a8e136a7d8a0fb1329384 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 3c38df051095289667b6f09ebd0cc149
_md5_=4a94b8db43f0aadb5ece67757ccbe635
diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
index 7ad2ddef4d67..8a2a1ecd5918 100644
--- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
+++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
@@ -9,5 +9,5 @@ LICENSE=AGPL-3
RDEPEND=dev-perl/PerlIO-gzip dev-perl/GDGraph sci-biology/libgtextutils:= sci-visualization/gnuplot
SLOT=0
SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=c3bb0edd6b01a31019cf5fd59e22122a
diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r1 b/metadata/md5-cache/sci-biology/iedera-1.05-r1
index 3848bb24f5df..36d290218c6e 100644
--- a/metadata/md5-cache/sci-biology/iedera-1.05-r1
+++ b/metadata/md5-cache/sci-biology/iedera-1.05-r1
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
LICENSE=GPL-2
SLOT=0
SRC_URI=http://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=ce77e1e27bd52fed2fd2af52744d6288
diff --git a/metadata/md5-cache/sci-biology/kallisto-0.46.2 b/metadata/md5-cache/sci-biology/kallisto-0.46.2
index b656f0241bf2..f1fd6836016f 100644
--- a/metadata/md5-cache/sci-biology/kallisto-0.46.2
+++ b/metadata/md5-cache/sci-biology/kallisto-0.46.2
@@ -12,5 +12,5 @@ RDEPEND=sci-libs/htslib:= sys-libs/zlib:= hdf5? ( sci-libs/hdf5:= )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.46.2.tar.gz -> kallisto-0.46.2.tar.gz
-_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 4f29a8b760a594a212abe9c2ba957c31 cmake 9f12546ab831b81c615d90e6b9e34e68
+_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils fef481272d4a8e136a7d8a0fb1329384 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 3c38df051095289667b6f09ebd0cc149
_md5_=1b739cad0275e6dc5a320723611b78e9
diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
index c075369c2ee0..e0f0b6ae9552 100644
--- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
+++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
LICENSE=AGPL-3
SLOT=0/0
SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=867c9b9e4eee26ad2a76ff6ff0594f52
diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 b/metadata/md5-cache/sci-biology/maq-0.7.1-r2
index e66bc54417bb..7e5b27a502b2 100644
--- a/metadata/md5-cache/sci-biology/maq-0.7.1-r2
+++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r2
@@ -9,5 +9,5 @@ LICENSE=GPL-3
RDEPEND=sys-libs/zlib
SLOT=0
SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=39ffb0025210075a8d7d7f6f81f8da56
diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
index dbfefa5e7cf0..05e90e21fc53 100644
--- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
+++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
@@ -9,5 +9,5 @@ LICENSE=GPL-3
RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq
SLOT=0
SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=dee50558d10e75ff9e96f4c3f177c55f
diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137
index 6548f3e8e5e8..eef2cec8fdfe 100644
--- a/metadata/md5-cache/sci-biology/mcl-14.137
+++ b/metadata/md5-cache/sci-biology/mcl-14.137
@@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86
LICENSE=GPL-2
SLOT=0
SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=9779366f51f2fea08274072a9a019159
diff --git a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
index b0a660904af6..ea0eec590e48 100644
--- a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
+++ b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
@@ -11,5 +11,5 @@ LICENSE=GPL-3
RDEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran
SLOT=0
SRC_URI=https://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip
-_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 fortran-2 a85daa133d055abaa5ec7504ab4a4c27
+_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 fortran-2 72d28c6872beb1e7cb99684b0ae4715d
_md5_=2a931ea6d0536a0cb3441d235f5d2d6b
diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
index c853a35cdc58..64315ee7ed19 100644
--- a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
+++ b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
@@ -11,5 +11,5 @@ LICENSE=BSD
RDEPEND=xml? ( dev-libs/libxml2 ) !dev-games/libnw
SLOT=0
SRC_URI=http://cegg.unige.ch/pub/newick-utils-1.6.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=fac40fe86b457a75883a5eb465ce18d8
diff --git a/metadata/md5-cache/sci-biology/pysam-0.17.0 b/metadata/md5-cache/sci-biology/pysam-0.17.0
index 0ab30c783146..cade4c7f912b 100644
--- a/metadata/md5-cache/sci-biology/pysam-0.17.0
+++ b/metadata/md5-cache/sci-biology/pysam-0.17.0
@@ -13,5 +13,5 @@ REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targe
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.17.0.tar.gz -> pysam-0.17.0.tar.gz
-_eclasses_=multibuild d79bd5b4bc4edcb1f5bc19591f8d4714 multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 python-utils-r1 d3d7da5aff94a677154819e0cb95ee36 python-r1 bcd408f1e4a9669198ef4dfcd5ab8696 distutils-r1 d540d96908dd5622f3dfa41d167e632d
+_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 python-utils-r1 dfa3a38467793e97fcf791b156510654 python-r1 8638751691200e941f26fe0ac3aef1d1 distutils-r1 e91901adfcf0640d2daa4dc863ff5377
_md5_=5afaf93aeaee2506b60aa22aac9b3a2c
diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
index 42919bd3475e..65675f08ec08 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
+++ b/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seq
REQUIRED_USE=cpu_flags_x86_sse4_1
SLOT=0
SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz
-_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 4f29a8b760a594a212abe9c2ba957c31 cmake 9f12546ab831b81c615d90e6b9e34e68 multibuild d79bd5b4bc4edcb1f5bc19591f8d4714
+_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils fef481272d4a8e136a7d8a0fb1329384 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 3c38df051095289667b6f09ebd0cc149 multibuild d26d81f242cb193d899a72bca423d0bd
_md5_=8796fa7c1594d16d8a9b96920de5cf2b
diff --git a/metadata/md5-cache/sci-biology/seqan-3.1.0 b/metadata/md5-cache/sci-biology/seqan-3.1.0
index 53e549b6d69e..8085cfb3450c 100644
--- a/metadata/md5-cache/sci-biology/seqan-3.1.0
+++ b/metadata/md5-cache/sci-biology/seqan-3.1.0
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2:= dev-cpp/range-v3 dev-libs/cereal sci-libs/lemon sys-lib
REQUIRED_USE=cpu_flags_x86_sse4_2
SLOT=0
SRC_URI=https://github.com/seqan/seqan3/releases/download/3.1.0/seqan3-3.1.0-Source.tar.xz
-_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 4f29a8b760a594a212abe9c2ba957c31 cmake 9f12546ab831b81c615d90e6b9e34e68
+_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils fef481272d4a8e136a7d8a0fb1329384 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 3c38df051095289667b6f09ebd0cc149
_md5_=79bf85e28c26de53181c27b102f90252
diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
index 6d86b291d7e8..4835b52cee6b 100644
--- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
+++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
@@ -10,5 +10,5 @@ LICENSE=GPL-2
RDEPEND=x11-libs/wxGTK:3.0[X]
SLOT=0
SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 wxwidgets 7e8a20d3bacea0e3ecf6e96fb72180aa
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 wxwidgets c09e9b94378cadaf6ef86ec1534c0fd6
_md5_=14493f936bb599dd7faec748cece70f3
diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40 b/metadata/md5-cache/sci-biology/uchime-4.2.40
index ef2469b2a282..882e0f396903 100644
--- a/metadata/md5-cache/sci-biology/uchime-4.2.40
+++ b/metadata/md5-cache/sci-biology/uchime-4.2.40
@@ -8,5 +8,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
LICENSE=public-domain
SLOT=0
SRC_URI=https://www.drive5.com/uchime/uchime4.2.40_src.tar.gz
-_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 4f29a8b760a594a212abe9c2ba957c31 cmake 9f12546ab831b81c615d90e6b9e34e68
+_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils fef481272d4a8e136a7d8a0fb1329384 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 3c38df051095289667b6f09ebd0cc149
_md5_=421c75fd545cd9d38575321e00aeab36
diff --git a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1 b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1
index f8ed240d1f22..f73e59a058ac 100644
--- a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1
+++ b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1
@@ -11,5 +11,5 @@ RDEPEND=dev-libs/openssl:0= media-libs/libpng:0= !<sci-biology/ucsc-genome-brows
REQUIRED_USE=server? ( mysql )
SLOT=0
SRC_URI=http://hgdownload.cse.ucsc.edu/admin/jksrc.v260.zip
-_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 webapp 60f2eb31dec733d05e8114cc078ebc33
+_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 webapp cbf94d7383f416c5ead4634aa89916a9
_md5_=35cb93e40ad2d78c190e860dd3944557
diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14
index dd9d01818bfc..ebf9c6211d5c 100644
--- a/metadata/md5-cache/sci-biology/vcftools-0.1.14
+++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14
@@ -10,5 +10,5 @@ LICENSE=LGPL-3
RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
SLOT=0
SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 perl-functions fea344a91ebf37efadf172c6a3de5a72
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 perl-functions fea344a91ebf37efadf172c6a3de5a72
_md5_=82adffd84f2a93745e683b498b79fbe8
diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.16 b/metadata/md5-cache/sci-biology/vcftools-0.1.16
index 47fc48c36dbe..b9e964720aef 100644
--- a/metadata/md5-cache/sci-biology/vcftools-0.1.16
+++ b/metadata/md5-cache/sci-biology/vcftools-0.1.16
@@ -11,5 +11,5 @@ LICENSE=LGPL-3
RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
SLOT=0
SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.16/vcftools-0.1.16.tar.gz
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e flag-o-matic a500d7cc40da3de38c361e889153bdf7 perl-functions fea344a91ebf37efadf172c6a3de5a72
+_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e flag-o-matic a500d7cc40da3de38c361e889153bdf7 perl-functions fea344a91ebf37efadf172c6a3de5a72
_md5_=faeb202e0aded0cb660ea87d6d7be81b
diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r2 b/metadata/md5-cache/sci-biology/yass-1.14-r2
index cd2cbf1236b0..eb837352fa08 100644
--- a/metadata/md5-cache/sci-biology/yass-1.14-r2
+++ b/metadata/md5-cache/sci-biology/yass-1.14-r2
@@ -10,5 +10,5 @@ LICENSE=GPL-2
RDEPEND=dmalloc? ( dev-libs/dmalloc )
SLOT=0
SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools 6cc26735fa9dd59e8c62880beda05b6e
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib de4beb52bfa93c4c5d96792a6b5e1784 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 vcs-clean d271b7bc7e6a009758d7d4ef749174e3 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff gnuconfig 262062cef0ba4f22b397193da514a350 libtool 241a8f577b9781a42a7421e53448a44e autotools ed3ef2014ee93d24bde80f0c0ea9732e
_md5_=3a4ba9b4e7b8efec51cfc79d261fefd3